Report for Sequence Feature Glyma08g08260
Feature Type: gene_model
Chromosome: Gm08
Start: 5908807
stop: 5911541
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g08260
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G17980 AT
Annotation by Michelle Graham. TAIR10: Sec1/munc18-like (SM) proteins superfamily | chr2:7824352-7826404 FORWARD LENGTH=627
SoyBase E_val: 0 ISS
GO:0006904 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis
SoyBase N/A ISS
GO:0009306 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein secretion
SoyBase N/A ISS
GO:0009630 GO-bp
Annotation by Michelle Graham. GO Biological Process: gravitropism
SoyBase N/A ISS
GO:0016192 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0008565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein transporter activity
SoyBase N/A ISS
KOG1301
KOG
Vesicle trafficking protein Sly1 (Sec1 family)
JGI ISS
PTHR11679 Panther
VESICLE PROTEIN SORTING-ASSOCIATED
JGI ISS
PTHR11679:SF2 Panther
SLY1-RELATED
JGI ISS
PF00995 PFAM
Sec1 family
JGI ISS
UniRef100_G7ZYG6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: SEC1 family transport protein SLY1 n=1 Tax=Medicago truncatula RepID=G7ZYG6_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233A6E9 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233A6E9 related cluster n=1 Tax=unknown RepID=UPI000233A6E9
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g08260
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g08260
Paralog Evidence Comments
Glyma05g25245 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g08260 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g077800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g08260
Coding sequences of Glyma08g08260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g08260.1 sequence type=CDS gene model=Glyma08g08260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTCTGAATCTCCGTCAGAAGCAAACAGAATGCATCGCGCGCATGCTGAACCTGAACCAGCCCTTAAACGCCGCCGGAACCGCGAACGAAGATGTCTACAAGATCCTCATCTACGACAAGTTCTGCCAGAACATCCTTTCCCCATTGATCCACGTCAAGGACCTCCGCAAGCACGGCGTGACCCTCTACTTCCTCATCGACAAGGATCGAAAACCTGTTCACGACGTTCCCGCGGTTTATTTCGTCCAACCCAACGTTTCCAACGTGCAACGCATCGTTTCGGACGCGTCCAAATCGCTCTACCAGAGCCTCCACCTCAACTTCTCCACCTCCATCCCGCGCCCCCTCCTCGAAGACCTCGCCGCCGGAACCCTAAATTCGGATTCGATTCAGCGAGTCTCGAAGGTTCACGATCAATATCTGGAATTTGTAACCCTAGAGGATAACCTTTTTTCACTGGCCCACAAGCCTTGTTATGTTCAACTCAACGATCCTTCCGCTGGGGACAAGGAAATTGAGGAGCTTGTTGAGAAGATCGTTGGTGGGTTGTTTTGTGTGTTGGCCACTCTTGCGGTTGTGCCGGTGATTCGGTGCCCGCGTGGCGGTCCTGCGGAGATGGTGGCTTCTGCATTGGATCAGCGGATTAGGGATCATTTGTTGTCCAAGAATAACTTGTTTACTGAGGGTGGGAACTTTGTGAGCTCGTTTCAGCGTCCTGTGTTGTGTATTTTTGACCGGAATTTCGAGTTGCCGGTGGCGATTCAGCATGATTTTCGCTACCGGCCGCTTGTTCATGATGTGCTTGGGTTGAGGCTGAATAGGCTGAGTGTGCAGGGGGAGAAGGGTGGGATGAGGTCTTATGAGTTGGACAGTGCTGATTCGTTTTGGGTTGCAAATGGGTCGCTGGAGTTTCCGGAGGTTGCGGTGGAGATTGAGACGCAGTTGAATAAGTATAAGAAGGATGTGGATGAGGTGAACAAGAGGACTGGCGGGACTCATGGCGCGGAGTTTGATGGGACGGATTTGATTGGGAACACGAAGCATTTGATGAATGCTGTGAATTCTCTGCCTGAGTTGACTGAGAGGAAACAGGTGATTGATAAGCATACCAACATTGCGACTGTGTTGTTGGGCGAGATCAAGGAGAGGTCTCTTGATTCTTATGCTAAGAAGGAGAATGACATGATGGTTAGAGGGGGCATTGAACGGGGTGACCTGCTTGGTGTGCTCAGAGGGAAGGGAACGAAGATGGATAAGCTTAGGTTTGCCATCATATATCTCATTTCATCGGAAACCATTAATCTGTCGGAAGTGGAAGCTGTGGAAGCGGCACTGAGAGAGTCTGAGGTTGATACTGCTGCTTTTCAGTATGTGAAGAAGATCAAGTCGTTGAATGTGTCGTTGGCATCGGCAAATTCTGCCAGCAGAAGTAATATTGTTGATTGGGCTGAGAAGCTCTATGGGCAGTCAATTAGTGCAGTGACGGCTGGTGTCAAAAATCTTTTGTCTAATGACAGGCAGCTAGCATTGGCAAGGACAGTCGAGGCCTTGATTGAAGGGAGGACAAATCCTGAAACAGATGTGTACCTTTCGTTTGATCCTCGTGCTCCGAAGTCTGGTTCGGGAGCAAGTAGCAGCCATTTGAAAGGGCCATTTAAGGAAGCAATTGTGTTCATGATTGGTGGTGGTAATTACGTTGAATATTGCAGTCTGCAAGAGCTTGCACAACATCAGCAACCTGCCAAACATATTATATATGGAACAACAGAAATGCTAACTGGAGTTGACTTTGTAGAGCAGCTAACATTGTTGGGGCAGAAGATGGGTTTGGGTAATGTTGGTTCTAGTTCTACCCCAGCTCAGTAG
Predicted protein sequences of Glyma08g08260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g08260.1 sequence type=predicted peptide gene model=Glyma08g08260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSLNLRQKQTECIARMLNLNQPLNAAGTANEDVYKILIYDKFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQPNVSNVQRIVSDASKSLYQSLHLNFSTSIPRPLLEDLAAGTLNSDSIQRVSKVHDQYLEFVTLEDNLFSLAHKPCYVQLNDPSAGDKEIEELVEKIVGGLFCVLATLAVVPVIRCPRGGPAEMVASALDQRIRDHLLSKNNLFTEGGNFVSSFQRPVLCIFDRNFELPVAIQHDFRYRPLVHDVLGLRLNRLSVQGEKGGMRSYELDSADSFWVANGSLEFPEVAVEIETQLNKYKKDVDEVNKRTGGTHGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMVRGGIERGDLLGVLRGKGTKMDKLRFAIIYLISSETINLSEVEAVEAALRESEVDTAAFQYVKKIKSLNVSLASANSASRSNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALARTVEALIEGRTNPETDVYLSFDPRAPKSGSGASSSHLKGPFKEAIVFMIGGGNYVEYCSLQELAQHQQPAKHIIYGTTEMLTGVDFVEQLTLLGQKMGLGNVGSSSTPAQ*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
