Glyma08g08210 - SoyBase

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Report for Sequence Feature Glyma08g08210

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5865767
stop:	5869393
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G60360	AT	Annotation by Michelle Graham. TAIR10: embryo sac development arrest 14 \| chr3:22312477-22314002 REVERSE LENGTH=228	SoyBase	E_val: 2.00E-103	ISS
GO:0000741	GO-bp	Annotation by Michelle Graham. GO Biological Process: karyogamy	SoyBase	N/A	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0009561	GO-bp	Annotation by Michelle Graham. GO Biological Process: megagametogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0032040	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: small-subunit processome	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG3237	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12838	Panther	U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11	JGI		ISS
PF03998	PFAM	Utp11 protein	JGI		ISS
UniRef100_B9RV90	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U3 small nucleolar RNA-associated protein, putative n=1 Tax=Ricinus communis RepID=B9RV90_RICCO	SoyBase	E_val: 1.00E-119	ISS
UniRef100_I1KR80	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KR80_SOYBN	SoyBase	E_val: 3.00E-167	ISS

Expression Patterns of Glyma08g08210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08210

Paralog	Evidence	Comments
Glyma05g25190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g077300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g08210

Limit To All Plant Sequences

>Glyma08g08210.1   sequence type=CDS   gene model=Glyma08g08210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCTCTTCGAAACGCCATTCCCAGGCGTGCTCACAAAGAGCGTTCTCAACCGTCGTCGAGGAAAAAATTCGGCCTTCTCGAAAAGCACAAGGACTATATCCAGCGTGCTAAAGCATTCCACAAGAAAGAAGACACTTTGCGGAAACTTAGGGAAAAAGCAGCGAATAGAAATGAAGATGAATTTTACTTCAAGATGGTTAGAACAAAAACCGTTGATGGAGTTCATAAACCAGAGAGTGAAGCGAATAAGTATACTCAGGAAGAGCTTATGCTGATGAAGACTCAGGACATGGGTTACATTCTTCAGAAGATTCAGAGTGAGAGAAATAAAATTGAAAGGCTAACTGCCTCACTGCACTCTATCGATAATCAGCCGGCGAACAAGCATGTTTTCTTTGCTGAGGACAGGGAAGAGGCTAAAGAGTTAGAATCACGACATCAAAAAAGTAAAATTCCACTTACTTCTGGTGATATTCCTGCTGGCATTAAGAGAAAAACAGATCGGTCTTACCAAGAGTTGGAAGCAAGGAGGGGTAGACTCAGCCAACTAGAGAAAATCTACATGGATATGACAATGCAGAAGGAGTTGCAGAAAAAAGGTAGGAAGCGCAAACTACGTGAAGACGAGATTGTTTGTCCAACAACTAAACCGGTATACATGTGGCGTGCTGAAAGAAAGCGTTGA

Predicted protein sequences of Glyma08g08210

Limit To All Plant Sequences

>Glyma08g08210.1   sequence type=predicted peptide   gene model=Glyma08g08210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSLRNAIPRRAHKERSQPSSRKKFGLLEKHKDYIQRAKAFHKKEDTLRKLREKAANRNEDEFYFKMVRTKTVDGVHKPESEANKYTQEELMLMKTQDMGYILQKIQSERNKIERLTASLHSIDNQPANKHVFFAEDREEAKELESRHQKSKIPLTSGDIPAGIKRKTDRSYQELEARRGRLSQLEKIYMDMTMQKELQKKGRKRKLREDEIVCPTTKPVYMWRAERKR*

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