Glyma08g08180 - SoyBase

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Report for Sequence Feature Glyma08g08180

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5840900
stop:	5843303
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74450	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF793) \| chr1:27982737-27983930 FORWARD LENGTH=397	SoyBase	E_val: 2.00E-147	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009612	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05633	PFAM	Protein of unknown function (DUF793)	JGI		ISS
UniRef100_I1KR74	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KR74_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9ST79	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CAA303718.1 protein n=1 Tax=Oryza sativa RepID=Q9ST79_ORYSA	SoyBase	E_val: 2.00E-109	ISS

Expression Patterns of Glyma08g08180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08180

Paralog	Evidence	Comments
Glyma05g25150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g076900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g08180

Limit To All Plant Sequences

>Glyma08g08180.4   sequence type=transcript   gene model=Glyma08g08180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAACTCTCCACAATAATAATATTCCAACTACATCGCTTTTGCTTCCCCTGAACTGGCGTAAACCAAAGCCCTCTGGCTTTGGTCCTTCGCTAGGGTTCGGGGATTCACCATTTCCAATGATCTTCTTCTCTCGGTTCTACACTTCTCAACTTCAGAGCTGTTTCTGAGGAGTTTCAAGTGATTTCTGTGGTTCTGGTTCGGTTTATTGAGGATCTTGAGGGGGCTTTTGCAGAAGGCTGTGACTCTGTGACAATGCCTTCTACAGAAAATCAGGGCTTTTCGTTGTCCTTTTCCTCGTTTGGCCGTTCCATATTTGGTGTCGGGCAGGAGCAGGTTCATTCTGTGGAAGCAAGTAATGAATCTGATTCCTGTAATTTAGAGCTCGGGTCATTCCAAAAGCGTGTTACCGATCGATTTCAAGACCTTTCTGTAGCTAGTGATGAGCAATTTCTCTCAATTGATTGGATTCAGAAGCTCCTCGGAGCATTTATCTGCTGCCAAGAGGAATTCAGAGCCATCCTGTTGAATAACAAAGAGCAGGTCACAAAACCCCCCCTTGATCGCATGATTTCTGAATTCTTTGAGAGGTCAGTGAAGGCGCTTGACATTTGTAATGCTAGCCGAGATGGGATTGAGAAGATTCGCACATGGCAAAAGCATCTGGAAATTGTGTTTTGTGCCTTGGGTTCGAGTAAGAGAGCGTTAACTGAAGGCCATTTCCGGAGGGCAAGAAAGGCACTGATGGATTTAGCATTGGCAATGCTTGATGAAAAAGAGTCTGGATCAGTTTTTTCTCAGCGTAATAGGTCTTTTGGGCGACATAACTCTGGCAAGGATCATCACTCCTCATCAGGGCATTCAAGATCGCATTCGTGGAGTGTCTCTCGTTCCTGGTCTGCAGCCAAGCAACTACAATCCATTGCGAATAACCTTGTTCCACCCCGTGCTACTGAGGTTGCTGCAACAAGTGGGCTTGCGACTCCTGTTTATACAATGAACTGTATTCTCCTGATAGTTTTGTGGACCCTTGTTGCAGCCATTCCTTGTCAGGATAGGGGTCTAAACATTCATTTTTCAGTCCCACGGCAATTATCCTGGAGCACTCCGGTTACCTCACTTCATGAACGAATCACGGAAGAGTCAAAGAAGCGAGAGCGCCAAAACTCAAATGGTTTGTTGAAGGAGATATATCAAGTTGAGATAAGCAGCCGCCGCTTGACCGACCTGATAGATTCAGCTCAGTTTCCGTTGGCAGATGACCAGAAAACAGAAGTTGAGCGCAATGTGATGGAGCTGATGCGTGTTTGTGAAGCTTTCAGAAATGGATCGGATCCGTTGGAGCGCCAAGTGAGGGAGGTCTTCCAGAAGATAATGGCATGTCGAACTGAGGGGCTCGATTATCTTGGCACGCCAAGCCATACAGAGCAATGAAAATGGTGGGTTGTTGATGAGCTATCAGATGTACAAATTTGCGGAACTGTGTACATTTTACATCTTACCATCTTTTTCTGAGGAGTGACTCGGCAAGATAAGCAGACAAATCTTTTAGGACTCTTGTGATGCGTTGTATTAAATTATTAATCTCAGTACTTGTGTAAAAAAAAAAAAAAAAGAATGGTCAGGTTACGTGTTAAATAGTTCATAGTTTCTTTGCTTTATTATATAAAATAGCGTTTTTGTTGCACATGTATGAGGTAATTTTTAAGGCAGCAGGCAGAACTTCAATTAGAAGGAAATTGTATTATGCCTTGGAAGTATGTCTTTTCGTGTTGTTGATCAAAACTAGAAGGGAACTTGGACGTGGGGATGCTAATGAAGGGATTTAGATGGTTTGTATGAGTT

Coding sequences of Glyma08g08180

Limit To All Plant Sequences

>Glyma08g08180.3   sequence type=CDS   gene model=Glyma08g08180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCTACAGAAAATCAGGGCTTTTCGTTGTCCTTTTCCTCGTTTGGCCGTTCCATATTTGGTGTCGGGCAGGAGCAGGTTCATTCTGTGGAAGCAAGTAATGAATCTGATTCCTGTAATTTAGAGCTCGGGTCATTCCAAAAGCGTGTTACCGATCGATTTCAAGACCTTTCTGTAGCTAGTGATGAGCAATTTCTCTCAATTGATTGGATTCAGAAGCTCCTCGGAGCATTTATCTGCTGCCAAGAGGAATTCAGAGCCATCCTGTTGAATAACAAAGAGCAGGTCACAAAACCCCCCCTTGATCGCATGATTTCTGAATTCTTTGAGAGGTCAGTGAAGGCGCTTGACATTTGTAATGCTAGCCGAGATGGGATTGAGAAGATTCGCACATGGCAAAAGCATCTGGAAATTGTGTTTTGTGCCTTGGGTTCGAGTAAGAGAGCGTTAACTGAAGGCCATTTCCGGAGGGCAAGAAAGGCACTGATGGATTTAGCATTGGCAATGCTTGATGAAAAAGAGTCTGGATCAGTTTTTTCTCAGCGTAATAGGTCTTTTGGGCGACATAACTCTGGCAAGGATCATCACTCCTCATCAGGGCATTCAAGATCGCATTCGTGGAGTGTCTCTCGTTCCTGGTCTGCAGCCAAGCAACTACAATCCATTGCGAATAACCTTGTTCCACCCCGTGCTACTGAGGTTGCTGCAACAAGTGGGCTTGCGACTCCTGTTTATACAATGAACTGTATTCTCCTGATAGTTTTGTGGACCCTTGTTGCAGCCATTCCTTGTCAGGATAGGGGTCTAAACATTCATTTTTCAGTCCCACGGCAATTATCCTGGAGCACTCCGGTTACCTCACTTCATGAACGAATCACGGAAGAGTCAAAGAAGCGAGAGCGCCAAAACTCAAATGGTTTGTTGAAGGAGATATATCAAGTTGAGATAAGCAGCCGCCGCTTGACCGACCTGATAGATTCAGCTCAGTTTCCGTTGGCAGATGACCAGAAAACAGAAGTTGAGCGCAATGTGATGGAGCTGATGCGTGTTTGTGAAGCTTTCAGAAATGGATCGGATCCGTTGGAGCGCCAAGTGAGGGAGGTCTTCCAGAAGATAATGGCATGTCGAACTGAGGGGCTCGATTATCTTGGCACGCCAAGCCATACAGAGCAATGA

>Glyma08g08180.4   sequence type=CDS   gene model=Glyma08g08180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCTACAGAAAATCAGGGCTTTTCGTTGTCCTTTTCCTCGTTTGGCCGTTCCATATTTGGTGTCGGGCAGGAGCAGGTTCATTCTGTGGAAGCAAGTAATGAATCTGATTCCTGTAATTTAGAGCTCGGGTCATTCCAAAAGCGTGTTACCGATCGATTTCAAGACCTTTCTGTAGCTAGTGATGAGCAATTTCTCTCAATTGATTGGATTCAGAAGCTCCTCGGAGCATTTATCTGCTGCCAAGAGGAATTCAGAGCCATCCTGTTGAATAACAAAGAGCAGGTCACAAAACCCCCCCTTGATCGCATGATTTCTGAATTCTTTGAGAGGTCAGTGAAGGCGCTTGACATTTGTAATGCTAGCCGAGATGGGATTGAGAAGATTCGCACATGGCAAAAGCATCTGGAAATTGTGTTTTGTGCCTTGGGTTCGAGTAAGAGAGCGTTAACTGAAGGCCATTTCCGGAGGGCAAGAAAGGCACTGATGGATTTAGCATTGGCAATGCTTGATGAAAAAGAGTCTGGATCAGTTTTTTCTCAGCGTAATAGGTCTTTTGGGCGACATAACTCTGGCAAGGATCATCACTCCTCATCAGGGCATTCAAGATCGCATTCGTGGAGTGTCTCTCGTTCCTGGTCTGCAGCCAAGCAACTACAATCCATTGCGAATAACCTTGTTCCACCCCGTGCTACTGAGGTTGCTGCAACAAGTGGGCTTGCGACTCCTGTTTATACAATGAACTGTATTCTCCTGATAGTTTTGTGGACCCTTGTTGCAGCCATTCCTTGTCAGGATAGGGGTCTAAACATTCATTTTTCAGTCCCACGGCAATTATCCTGGAGCACTCCGGTTACCTCACTTCATGAACGAATCACGGAAGAGTCAAAGAAGCGAGAGCGCCAAAACTCAAATGGTTTGTTGAAGGAGATATATCAAGTTGAGATAAGCAGCCGCCGCTTGACCGACCTGATAGATTCAGCTCAGTTTCCGTTGGCAGATGACCAGAAAACAGAAGTTGAGCGCAATGTGATGGAGCTGATGCGTGTTTGTGAAGCTTTCAGAAATGGATCGGATCCGTTGGAGCGCCAAGTGAGGGAGGTCTTCCAGAAGATAATGGCATGTCGAACTGAGGGGCTCGATTATCTTGGCACGCCAAGCCATACAGAGCAATGA

Predicted protein sequences of Glyma08g08180

Limit To All Plant Sequences

>Glyma08g08180.3   sequence type=predicted peptide   gene model=Glyma08g08180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSTENQGFSLSFSSFGRSIFGVGQEQVHSVEASNESDSCNLELGSFQKRVTDRFQDLSVASDEQFLSIDWIQKLLGAFICCQEEFRAILLNNKEQVTKPPLDRMISEFFERSVKALDICNASRDGIEKIRTWQKHLEIVFCALGSSKRALTEGHFRRARKALMDLALAMLDEKESGSVFSQRNRSFGRHNSGKDHHSSSGHSRSHSWSVSRSWSAAKQLQSIANNLVPPRATEVAATSGLATPVYTMNCILLIVLWTLVAAIPCQDRGLNIHFSVPRQLSWSTPVTSLHERITEESKKRERQNSNGLLKEIYQVEISSRRLTDLIDSAQFPLADDQKTEVERNVMELMRVCEAFRNGSDPLERQVREVFQKIMACRTEGLDYLGTPSHTEQ*

>Glyma08g08180.4   sequence type=predicted peptide   gene model=Glyma08g08180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSTENQGFSLSFSSFGRSIFGVGQEQVHSVEASNESDSCNLELGSFQKRVTDRFQDLSVASDEQFLSIDWIQKLLGAFICCQEEFRAILLNNKEQVTKPPLDRMISEFFERSVKALDICNASRDGIEKIRTWQKHLEIVFCALGSSKRALTEGHFRRARKALMDLALAMLDEKESGSVFSQRNRSFGRHNSGKDHHSSSGHSRSHSWSVSRSWSAAKQLQSIANNLVPPRATEVAATSGLATPVYTMNCILLIVLWTLVAAIPCQDRGLNIHFSVPRQLSWSTPVTSLHERITEESKKRERQNSNGLLKEIYQVEISSRRLTDLIDSAQFPLADDQKTEVERNVMELMRVCEAFRNGSDPLERQVREVFQKIMACRTEGLDYLGTPSHTEQ*

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