Glyma08g08130 - SoyBase

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Report for Sequence Feature Glyma08g08130

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5812827
stop:	5816701
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G43710	AT	Annotation by Michelle Graham. TAIR10: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein \| chr1:16486534-16488298 REVERSE LENGTH=482	SoyBase	E_val: 0	ISS
GO:0006520	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process	SoyBase	N/A	ISS
GO:0006580	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethanolamine metabolic process	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016831	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carboxy-lyase activity	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
KOG0629	KOG	Glutamate decarboxylase and related proteins	JGI		ISS
PTHR11999	Panther	GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE	JGI		ISS
PTHR11999:SF4	Panther	gb def: glutamate decarboxylase [caenorhabditis elegans]	JGI		ISS
PF00282	PFAM	Pyridoxal-dependent decarboxylase conserved domain	JGI		ISS
UniRef100_G7IL92	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histidine decarboxylase n=1 Tax=Medicago truncatula RepID=G7IL92_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KR71	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KR71_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g08130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g08130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g076400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g08130

Limit To All Plant Sequences

>Glyma08g08130.3   sequence type=transcript   gene model=Glyma08g08130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAATTGTATTACTCCTAATAATTTGCATGTAAATTCATGAAATGTGGCAACTATAAATGAGGGCCATGCTCCCTCATTAACCACACGAGCCTTCCCTTTCATTCTTTTATGATTCTTCACTCAATTTCATTAGAAGCTGCTTCTGAGATAAAAATATCAGCTTTTGTAGTTCACACTCTAGTTGCTTCTGCAAAATGGTAGGAAGTGTTGATGTTCTAGCTCATGATTCCAGCATTAATGGAACAATGAAACAGTGGCCTGAAGATTTCAGTTCCATGACGATTATGAGAGATCATGTGACACTCACAATTGGAGAGAATGGCATTGGCAATGGGGTTGTTCAGAATGGTACAGAAAATGGAGAAAGAAAGATAGTGCTTGGAAGAAATATTCACACCACGTGCCTTGAAGTCACTGAGCCTGATATAGATGATGAGGTTACTGGGGAAAGGGAAGCTTATATGGCAGGCGTGTTGGCTAAATACAAAAAATCTCTGACTGAAAGGACCAACTATCATTTAGGATACCCCTATAATTTGAATTTTGACTATGATGCACTCTCTCAGCTTCAGCATTTTTCCATCAACAACCTGGGGGATCCCTTCATTGAAAGCAATTATGGTGTCCACTCTAGGCAGTTTGAGGTTGGTGTTTTGGACTGGTTCGCGCGGTTGTGGGAACTCGAGAAAGATGAGTATTGGGGCTATATAACAAACTGTGGCACAGAAGGCAATCTCCATGGCATCCTAGTGGGGAGAGAGGTTTTCCCTGATGGGATTTTATATGCCTCACAGGAATCACATTATTCTGTTTTCAAAGCTGCTAGAATGTACAGAATGGAATGTGTGAAGATTAACACTCTTTGGTCTGGTGAGATTGATTGTGATGATTTTAAGGCCAAGCTTCTTTGTCACAAGGACAAGCCAGCAATTGTGAATGTGAACATAGGTACAACTGTGAAGGGAGCAGTGGATGACCTTGATCTGGTAATAAAGAAACTAGAAGAGGCAGGATTTTCACAAGACAGGTTCTATATCCATTGTGATGGGGCTTTGTTTGGTCTCATGCTGCCTTTTGTCAAACGTGCTCCAAAAATTTCATTCAAGAAACCAATTGGTAGTGTGAGTGTCTCAGGCCACAAATTCGTGGGGTGCCCCATGCCCTGTGGCGTGCAGATAACACGGTTGGAGCACGTCAACGCTCTTTCCAGAAACGTCGAATACCTGGCTTCAAGGGACGCCACAATCATGGGAAGCAGGAACGGGCACGCCCCCATATTCCTCTGGTACAGCCTCAACATGAAAGGCTACAGAGGCTTCCAGAAAGAGGTGCAAAAGTGTTTGAGGAATGCACACTACTTCAAAGATCGCCTTGTGGATGCTGGCATTGGAGCGATGCTGAATGAGCTCAGCAGCACCGTTGTGTTTGAGAGGCCTCACGATGAAGGGTTTGTGCACAAGTGGCAGCTTGCGTGCCAAGGAAACGTTGCACATGTTGTGGTGATGCCTAATGTCACCATTGAGAAACTTGATGATTTTCTCAATGAGCTTGTGCAGAAGCGTGCTGTGTGGTTTAGAGATGGGAACTGTCAACCCTATTGTATAGCTTCTGATGTAGGACAGGAAAATTGCCTCTGTGCTCTGCACAGGTAACTTGTGTGTAATTAAGTAACTATATTTGTAATGTGTTTTTTTGAGTGTTTGTGGCTTCTGTCTTCATTGATCAGTGTTATGATTGCTAAAATAAAAACTGATGGATAAAAACTGCTAAAAGTCACTTGTTGGTTTAGAAATGTTTCTATCTGATGTATATCTTCTCATTTCCTCGTACCAGTGGAGAAGTTCTTTATAGTTTTTCTACTCTTTCTAGGACCGATTTTAAAGTGGACTTTTTTTTTTTTGGAATTTTTTAGAGAAGAAACTAAAAGAGTTTTGACAAAAATAAAAATGAGAAAGGCTTGTTTTTCTATTTGAAGGCACTCGAAAAAAAACTTTGAAATCAGCGACAAAACTATCGAAAGCAATTGGATCATGATCCGAGGGAGGCAAAATGAATTTTCCACGGGCAAGGCCAATCCATTTATCCCATTTTTGTTCAGCCTGAGTTAGAATAGCCCTTTTGATTCACTTCACTTAATACGACAAGAAAACATGTTGTAATCAGGGATTTTTATTCTTTAAGAAAACATCTAATGTCCTTAATTTTA

Coding sequences of Glyma08g08130

Limit To All Plant Sequences

>Glyma08g08130.2   sequence type=CDS   gene model=Glyma08g08130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGGAAGTGTTGATGTTCTAGCTCATGATTCCAGCATTAATGGAACAATGAAACAGTGGCCTGAAGATTTCAGTTCCATGACGATTATGAGAGATCATGTGACACTCACAATTGGAGAGAATGGCATTGGCAATGGGGTTGTTCAGAATGGTACAGAAAATGGAGAAAGAAAGATAGTGCTTGGAAGAAATATTCACACCACGTGCCTTGAAGTCACTGAGCCTGATATAGATGATGAGGTTACTGGGGAAAGGGAAGCTTATATGGCAGGCGTGTTGGCTAAATACAAAAAATCTCTGACTGAAAGGACCAACTATCATTTAGGATACCCCTATAATTTGAATTTTGACTATGATGCACTCTCTCAGCTTCAGCATTTTTCCATCAACAACCTGGGGGATCCCTTCATTGAAAGCAATTATGGTGTCCACTCTAGGCAGTTTGAGGTTGGTGTTTTGGACTGGTTCGCGCGGTTGTGGGAACTCGAGAAAGATGAGTATTGGGGCTATATAACAAACTGTGGCACAGAAGGCAATCTCCATGGCATCCTAGTGGGGAGAGAGGTTTTCCCTGATGGGATTTTATATGCCTCACAGGAATCACATTATTCTGTTTTCAAAGCTGCTAGAATGTACAGAATGGAATGTGTGAAGATTAACACTCTTTGGTCTGGTGAGATTGATTGTGATGATTTTAAGGCCAAGCTTCTTTGTCACAAGGACAAGCCAGCAATTGTGAATGTGAACATAGGTACAACTGTGAAGGGAGCAGTGGATGACCTTGATCTGGTAATAAAGAAACTAGAAGAGGCAGGATTTTCACAAGACAGGTTCTATATCCATTGTGATGGGGCTTTGTTTGGTCTCATGCTGCCTTTTGTCAAACGTGCTCCAAAAATTTCATTCAAGAAACCAATTGGTAGTGTGAGTGTCTCAGGCCACAAATTCGTGGGGTGCCCCATGCCCTGTGGCGTGCAGATAACACGGTTGGAGCACGTCAACGCTCTTTCCAGAAACGTCGAATACCTGGCTTCAAGGGACGCCACAATCATGGGAAGCAGGAACGGGCACGCCCCCATATTCCTCTGGTACAGCCTCAACATGAAAGGCTACAGAGGCTTCCAGAAAGAGGTGCAAAAGTGTTTGAGGAATGCACACTACTTCAAAGATCGCCTTGTGGATGCTGGCATTGGAGCGATGCTGAATGAGCTCAGCAGCACCGTTGTGTTTGAGAGGCCTCACGATGAAGGGTTTGTGCACAAGTGGCAGCTTGCGTGCCAAGGAAACGTTGCACATGTTGTGGTGATGCCTAATGTCACCATTGAGAAACTTGATGATTTTCTCAATGAGCTTGTGCAGAAGCGTGCTGTGTGGTTTAGAGATGGGAACTGTCAACCCTATTGTATAGCTTCTGATGTAGGACAGGAAAATTGCCTCTGTGCTCTGCACAGGTAA

>Glyma08g08130.3   sequence type=CDS   gene model=Glyma08g08130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGGAAGTGTTGATGTTCTAGCTCATGATTCCAGCATTAATGGAACAATGAAACAGTGGCCTGAAGATTTCAGTTCCATGACGATTATGAGAGATCATGTGACACTCACAATTGGAGAGAATGGCATTGGCAATGGGGTTGTTCAGAATGGTACAGAAAATGGAGAAAGAAAGATAGTGCTTGGAAGAAATATTCACACCACGTGCCTTGAAGTCACTGAGCCTGATATAGATGATGAGGTTACTGGGGAAAGGGAAGCTTATATGGCAGGCGTGTTGGCTAAATACAAAAAATCTCTGACTGAAAGGACCAACTATCATTTAGGATACCCCTATAATTTGAATTTTGACTATGATGCACTCTCTCAGCTTCAGCATTTTTCCATCAACAACCTGGGGGATCCCTTCATTGAAAGCAATTATGGTGTCCACTCTAGGCAGTTTGAGGTTGGTGTTTTGGACTGGTTCGCGCGGTTGTGGGAACTCGAGAAAGATGAGTATTGGGGCTATATAACAAACTGTGGCACAGAAGGCAATCTCCATGGCATCCTAGTGGGGAGAGAGGTTTTCCCTGATGGGATTTTATATGCCTCACAGGAATCACATTATTCTGTTTTCAAAGCTGCTAGAATGTACAGAATGGAATGTGTGAAGATTAACACTCTTTGGTCTGGTGAGATTGATTGTGATGATTTTAAGGCCAAGCTTCTTTGTCACAAGGACAAGCCAGCAATTGTGAATGTGAACATAGGTACAACTGTGAAGGGAGCAGTGGATGACCTTGATCTGGTAATAAAGAAACTAGAAGAGGCAGGATTTTCACAAGACAGGTTCTATATCCATTGTGATGGGGCTTTGTTTGGTCTCATGCTGCCTTTTGTCAAACGTGCTCCAAAAATTTCATTCAAGAAACCAATTGGTAGTGTGAGTGTCTCAGGCCACAAATTCGTGGGGTGCCCCATGCCCTGTGGCGTGCAGATAACACGGTTGGAGCACGTCAACGCTCTTTCCAGAAACGTCGAATACCTGGCTTCAAGGGACGCCACAATCATGGGAAGCAGGAACGGGCACGCCCCCATATTCCTCTGGTACAGCCTCAACATGAAAGGCTACAGAGGCTTCCAGAAAGAGGTGCAAAAGTGTTTGAGGAATGCACACTACTTCAAAGATCGCCTTGTGGATGCTGGCATTGGAGCGATGCTGAATGAGCTCAGCAGCACCGTTGTGTTTGAGAGGCCTCACGATGAAGGGTTTGTGCACAAGTGGCAGCTTGCGTGCCAAGGAAACGTTGCACATGTTGTGGTGATGCCTAATGTCACCATTGAGAAACTTGATGATTTTCTCAATGAGCTTGTGCAGAAGCGTGCTGTGTGGTTTAGAGATGGGAACTGTCAACCCTATTGTATAGCTTCTGATGTAGGACAGGAAAATTGCCTCTGTGCTCTGCACAGGTAA

Predicted protein sequences of Glyma08g08130

Limit To All Plant Sequences

>Glyma08g08130.2   sequence type=predicted peptide   gene model=Glyma08g08130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGSVDVLAHDSSINGTMKQWPEDFSSMTIMRDHVTLTIGENGIGNGVVQNGTENGERKIVLGRNIHTTCLEVTEPDIDDEVTGEREAYMAGVLAKYKKSLTERTNYHLGYPYNLNFDYDALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITNCGTEGNLHGILVGREVFPDGILYASQESHYSVFKAARMYRMECVKINTLWSGEIDCDDFKAKLLCHKDKPAIVNVNIGTTVKGAVDDLDLVIKKLEEAGFSQDRFYIHCDGALFGLMLPFVKRAPKISFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHVNALSRNVEYLASRDATIMGSRNGHAPIFLWYSLNMKGYRGFQKEVQKCLRNAHYFKDRLVDAGIGAMLNELSSTVVFERPHDEGFVHKWQLACQGNVAHVVVMPNVTIEKLDDFLNELVQKRAVWFRDGNCQPYCIASDVGQENCLCALHR*

>Glyma08g08130.3   sequence type=predicted peptide   gene model=Glyma08g08130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGSVDVLAHDSSINGTMKQWPEDFSSMTIMRDHVTLTIGENGIGNGVVQNGTENGERKIVLGRNIHTTCLEVTEPDIDDEVTGEREAYMAGVLAKYKKSLTERTNYHLGYPYNLNFDYDALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITNCGTEGNLHGILVGREVFPDGILYASQESHYSVFKAARMYRMECVKINTLWSGEIDCDDFKAKLLCHKDKPAIVNVNIGTTVKGAVDDLDLVIKKLEEAGFSQDRFYIHCDGALFGLMLPFVKRAPKISFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHVNALSRNVEYLASRDATIMGSRNGHAPIFLWYSLNMKGYRGFQKEVQKCLRNAHYFKDRLVDAGIGAMLNELSSTVVFERPHDEGFVHKWQLACQGNVAHVVVMPNVTIEKLDDFLNELVQKRAVWFRDGNCQPYCIASDVGQENCLCALHR*

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