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Report for Sequence Feature Glyma08g08120

Feature Type:gene_model
Chromosome:Gm08
Start:5807466
stop:5808542
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g08120
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G43660AT Annotation by Michelle Graham. TAIR10: Vacuolar iron transporter (VIT) family protein | chr3:15565332-15565928 FORWARD LENGTH=198 SoyBaseE_val: 5.00E-79ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG4473 KOG Uncharacterized membrane protein JGI ISS
PF01988PFAM VIT family JGI ISS
UniRef100_I1KR70UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KR70_SOYBN SoyBaseE_val: 1.00E-164ISS
UniRef100_P16313UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nodulin-21 n=2 Tax=Glycine max RepID=NO21_SOYBN SoyBaseE_val: 2.00E-118ISS

Expression Patterns of Glyma08g08120
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08120
ParalogEvidenceComments
Glyma05g25010 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08120 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g076300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g08120
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g08120
>Glyma08g08120.1   sequence type=CDS   gene model=Glyma08g08120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAATGCTACACCTAATGGTTCGGTGCCACACAACCACGTAGGAGCAGTGCTTCCAACAATTCCCACAATCAAAATTGATGAGAAGCAAACCCTAGCCACCAGCGAAGACCACACCAGCATTGACTATTTACAAAGGGCACAGTGGCTTCGTGCAGCCGTTTTAGGAGCCAATGATGGGTTGGTTTCGGTAACATCATTGATGATGGGTGTAGGAGCTGTTAAAAAAGATGCAAAAGCTATGTTAGTTGCTGGTTTTGCAGGGTTAGTTGCAGGGGCTTGTGGCATGGCAATAGGAGAGTTTGTTGCTGTGTGCACTCAGTATGAAGTTGAGCTAGGTCAAATGAAGAGAGAGATGAATATGAGTGAGGGAGGAGAGAGAGACTTGGAGACGGAGAAGAGAACATTGCCTAATCCATTGCAAGCTACTTGGGCATCTGCACTCTCCTTTTCTATTGGTGCATTGGTGCCTCTACTTTCTGCTGCTTTCGTAGCAGATTACAGAACTAGGGTTATTGTGGTTGTGGCAATGGCTAGTTTGGCTTTGGTGGTGTTTGGAAGTGTGGGGGCTCAGCTGGGAAAAACTCCTAAGTTAAAATCTTGTGTAAGGTTCCTTCTTGGAGGATGGATAGCCATGTCCATCACTTTTGGGTTAACTAAATTAATGGGTGCTAGCGCTTTAGAATAA
Predicted protein sequences of Glyma08g08120
>Glyma08g08120.1   sequence type=predicted peptide   gene model=Glyma08g08120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANATPNGSVPHNHVGAVLPTIPTIKIDEKQTLATSEDHTSIDYLQRAQWLRAAVLGANDGLVSVTSLMMGVGAVKKDAKAMLVAGFAGLVAGACGMAIGEFVAVCTQYEVELGQMKREMNMSEGGERDLETEKRTLPNPLQATWASALSFSIGALVPLLSAAFVADYRTRVIVVVAMASLALVVFGSVGAQLGKTPKLKSCVRFLLGGWIAMSITFGLTKLMGASALE*






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