Glyma08g08070 - SoyBase

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Report for Sequence Feature Glyma08g08070

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5790338
stop:	5791353
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G43660	AT	Annotation by Michelle Graham. TAIR10: Vacuolar iron transporter (VIT) family protein \| chr3:15565332-15565928 FORWARD LENGTH=198	SoyBase	E_val: 5.00E-35	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4473	KOG	Uncharacterized membrane protein	JGI		ISS
PF01988	PFAM	VIT family	JGI		ISS
UniRef100_B9SWZ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nodulin, putative n=1 Tax=Ricinus communis RepID=B9SWZ1_RICCO	SoyBase	E_val: 5.00E-37	ISS
UniRef100_I1KR66	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KR66_SOYBN	SoyBase	E_val: 2.00E-152	ISS

Expression Patterns of Glyma08g08070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g08070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g075900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g08070

Limit To All Plant Sequences

>Glyma08g08070.1   sequence type=CDS   gene model=Glyma08g08070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCTGGGCACTAGTAGCAATGAAATGTCAATTGACCATATTGAGATTCTCATCATACATTCTAATGATATAGAAGCAAAGCCTAGCCAATACATTGAAGAAAACAATATTGAGTACTGTCAAAGGGCGCAGTGGCTTGGAGCTGTGTTTGGAGCCAAAAATGGGTTGGTCTTAATCACCTTATTGATGATGGCCGTTGAAGCTTTGAATGAAGACATCACAACCATGCTTCTTGCCGGCTTCGCAGGACTAGTTGTTGGGGCTAGCGGTATGGCAATTGAAGAATATGTGTGCGCTCAATTAGACACAGAGGTAGCTGAAATGAAAGTCCACAATAACAAACACAAAGAAGTGGAGGAAGATGACGAACAACTTAACCCTTTTCAGGCTTCCATAGCATCAGCAATTGGATTTTCTGTTGGTGCTGCTGTGTCAGTGCTAGCAGCTGTTTTTATAAGGGACTATAAGATCAGGTTATTGGTTTTTGCTGTGTCCATCTTGGCATTTTTCGTATTTGGAGGTGTAGGAACAGTACTTGGTGAAAGTAAAACACCAGTGAGAAGGACTTGTGATTGTGATAGTGCTGATTGGAGGTTGGATGACTATGGCTATTACTTTTGGCTTTGA

Predicted protein sequences of Glyma08g08070

Limit To All Plant Sequences

>Glyma08g08070.1   sequence type=predicted peptide   gene model=Glyma08g08070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLGTSSNEMSIDHIEILIIHSNDIEAKPSQYIEENNIEYCQRAQWLGAVFGAKNGLVLITLLMMAVEALNEDITTMLLAGFAGLVVGASGMAIEEYVCAQLDTEVAEMKVHNNKHKEVEEDDEQLNPFQASIASAIGFSVGAAVSVLAAVFIRDYKIRLLVFAVSILAFFVFGGVGTVLGESKTPVRRTCDCDSADWRLDDYGYYFWL*

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