Glyma08g07990 - SoyBase

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Report for Sequence Feature Glyma08g07990

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5731318
stop:	5738650
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g07990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G19720	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr3:6850591-6855389 REVERSE LENGTH=777	SoyBase	E_val: 0	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0010020	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast fission	SoyBase	N/A	ISS
GO:0016559	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome fission	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009707	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast outer membrane	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
KOG0446	KOG	Vacuolar sorting protein VPS1, dynamin, and related proteins	JGI		ISS
PTHR11566	Panther	DYNAMIN	JGI		ISS
PTHR11566:SF63	Panther		JGI		ISS
PF00350	PFAM	Dynamin family	JGI		ISS
UniRef100_B9SRI2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GTP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SRI2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KR58	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KR58_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g07990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07990

Paralog	Evidence	Comments
Glyma05g24890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g075100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g07990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g07990

Limit To All Plant Sequences

>Glyma08g07990.2   sequence type=transcript   gene model=Glyma08g07990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCGCCACTTGGGAATTTAGGGCACAAAGATACAGTCCATCATATTACTATAGGGGGTAAAATCGTAAATAACAAATTGGAACACAGAATAGAATAATAGTCAAAAAAGTAAAACACAATGAAGCAGTGTGTTGTGTGGTGGGCACTTATCTGAATTGAGCGGGGAAATGGAAAAAGAGGAGGAGGAGCAGCGCGAGTGGAGGCTATACGAAGGCTACAATGAGCTCCACGCGCTGGCCCAGGACTTGCACACGCCCTTCGACGCCCCCGCCGTCTTGGTCGTCGGCCACCAGACCGACGGCAAGAGCGCCCTAGTCGAGGCCCTGATGGGCTTCCAGTTCAACCACGTCGGCGGCGGCACCAAAACCCGCCGCCCCATCACCCTCCACATGAAATACGACCCTCAATGCGAGTCCCCTTCCTGCCACCTCGTCTCCGACTCCGACCCTTCTCTTTCCCACCATAAATCCCTCCCCCAAATCCAGGCATATATTGAAGCGGAAAATGCGAGGTTGGAGCAGGACACGAGCCAATTCTCTGCCAAAGAAATCATCATCAAAGTTGAATACAAGTACTGCCCCAACCTCACCATCATCGACACTCCCGGCCTCATCGCGCCGGCTCCGGGCCGGAAGAACCGTGCTCTGCAGGCGCAGGCGCGTGCCGTGGAGTCGCTGGTGCGGGAAAAGATGCAGCACAAGGAGTTCATCATCCTCTGCCTTGAAGATTGCAGCGACTGGAGCAACGCCACCACGAGGCGCGTCGTCATGCAGGTCGATCCCGAATTGGCCAGGACAGTCATCGTGTCCACCAAGCTGGACACCAGGATTCCTCAGTTTGCACGTCCTTCTGATGTTGAGGTCTTCCTCTCGCCGCCGCCGTCGACGCTCGACGGCTGCATTCTTGGTGATTCTCCGTTCTTCACGTCCGTGCCTTCTGGAAGAGTTGGGTGTGGAAGTGGTTATCTCCATAGCTCCAATGATGAGTTCAAACAGGCGGTTTGCTTCAGAGAGATAGAAGATGTTGCATCTTTGGAGGAGAAGTTGGGCAGGGCATTGTCAAAGCAGGAAAGGAGTAGGATAGGCGTGAGCAAACTTAGGCTGTTTCTGGAAGAATTGCTACAAAAGAGGTATATAAATAATGTACCATTGATCATTCCACTTCTCGAGAAGGAGTACCGGAGTGTGACAAGGAAATTAAGTGACATTAATCAAGAATTGAGCACACTTGATGAAGCCAAACTGAAGGAGAAAGGAAGAGCCTTCCATGATATGTTCTTGACCAAGTTGTCATTGTTGCTTAAAGGGACAGTTGTTGCACCTCCTGATAAGTTTGGTGAAACACTGCAAGACGAACGAATTAATGGAGGTGCATTTATTGGTGCTGATGGTGTTCAGTTCCCTCACAAGCTAATACCTAATGCAGGGATGCGTCTTTATGGTGGTGCACAATATCATCGGGCAATGGCTGAATTTCGTTTTTTGGTTGGAGGAATCAAGTGTCCCCCAATTACTCGGGAAGAAATTGTAAACGCATGTGGAGTTGAAGACATTCATGATGGAACAAACTACTCTAGGACTGCTTGTGTAATTGCTGTTGCGAAGGCTCGTGACACATTTGAACCTTTTCTTCATCAGTTGGGGTCCAGACTGTTGTATATACTCAAGAGATTGCTTCCGATCTCTGTTTTTCTTCTTCAGAAAGATAGTGAATATCTAAGTGGCCATGAGGTGTTCCTCAGGCGTGTTGCCTCTGCCTTCAACAACTTTGCAGAATCTACTGAAAAATCATGCCGTGAAAAATGTATGGAGGACTTGGTAAGCACCACAAGATATGTTTCATGGTCTCTCCACAATAAGTTCAATTGTTTCCTTTTGATGCCCATTGTGGACAAATTGCCTGCTCTTCTCCGGGAAGACCTAGAATCTGCTTTTCAAGATGACCTGGATAATGTTTTTGACATAACCAATCTGCAGCACTCATTTGGGCAGCAAAAGAGAGAGACAGAAATTGAACTGAAAAGGATCAAGAGGCTCAAAGAGAAATTTAGAATGATACATGAGCAGCTAATTCAAAATCAAACCATGTGAATATGTGAGCTGCTGGAACTGCTGAGTATAATTTTCAAATGAAAAAGGCATGAGGTTTATAGATTTATGATTTTTCATTTTCCTATATTCGTGCTTACATAATGGCTTATTGTAGAAGAAGGATGACTAGATGTTCATTATGAGGACTCTTTGCTGTAGTTAACTGAATATTTTTTCCTCAAAGTCTCAAGTCAGTTCCTGTGCTTGTAGAATAGATTGTGGGTTAGAATTTCTTATTATTGAATGTTACACATACAAATATCTGGTTTTCAAGAGTTTCAAGAATAATTTTAAGATATGCCTACAAGTTAACAGAAGCAAATTACATTGGATCAGCACAT

Coding sequences of Glyma08g07990

Limit To All Plant Sequences

>Glyma08g07990.1   sequence type=CDS   gene model=Glyma08g07990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAAGAGGAGGAGGAGCAGCGCGAGTGGAGGCTATACGAAGGCTACAATGAGCTCCACGCGCTGGCCCAGGACTTGCACACGCCCTTCGACGCCCCCGCCGTCTTGGTCGTCGGCCACCAGACCGACGGCAAGAGCGCCCTAGTCGAGGCCCTGATGGGCTTCCAGTTCAACCACGTCGGCGGCGGCACCAAAACCCGCCGCCCCATCACCCTCCACATGAAATACGACCCTCAATGCGAGTCCCCTTCCTGCCACCTCGTCTCCGACTCCGACCCTTCTCTTTCCCACCATAAATCCCTCCCCCAAATCCAGGCATATATTGAAGCGGAAAATGCGAGGTTGGAGCAGGACACGAGCCAATTCTCTGCCAAAGAAATCATCATCAAAGTTGAATACAAGTACTGCCCCAACCTCACCATCATCGACACTCCCGGCCTCATCGCGCCGGCTCCGGGCCGGAAGAACCGTGCTCTGCAGGCGCAGGCGCGTGCCGTGGAGTCGCTGGTGCGGGAAAAGATGCAGCACAAGGAGTTCATCATCCTCTGCCTTGAAGATTGCAGCGACTGGAGCAACGCCACCACGAGGCGCGTCGTCATGCAGGTCGATCCCGAATTGGCCAGGACAGTCATCGTGTCCACCAAGCTGGACACCAGGATTCCTCAGTTTGCACGTCCTTCTGATGTTGAGGTCTTCCTCTCGCCGCCGCCGTCGACGCTCGACGGCTGCATTCTTGGTGATTCTCCGTTCTTCACGTCCGTGCCTTCTGGAAGAGTTGGGTGTGGAAGTGGTTATCTCCATAGCTCCAATGATGAGTTCAAACAGGCGGTTTGCTTCAGAGAGATAGAAGATGTTGCATCTTTGGAGGAGAAGTTGGGCAGGGCATTGTCAAAGCAGGAAAGGAGTAGGATAGGCGTGAGCAAACTTAGGCTGTTTCTGGAAGAATTGCTACAAAAGAGGTATATAAATAATGTACCATTGATCATTCCACTTCTCGAGAAGGAGTACCGGAGTGTGACAAGGAAATTAAGTGACATTAATCAAGAATTGAGCACACTTGATGAAGCCAAACTGAAGGAGAAAGGAAGAGCCTTCCATGATATGTTCTTGACCAAGTTGTCATTGTTGCTTAAAGGGACAGTTGTTGCACCTCCTGATAAGTTTGGTGAAACACTGCAAGACGAACGAATTAATGGAGGTGCATTTATTGGTGCTGATGGTGTTCAGTTCCCTCACAAGCTAATACCTAATGCAGGGATGCGTCTTTATGGTGGTGCACAATATCATCGGGCAATGGCTGAATTTCGTTTTTTGGTTGGAGGAATCAAGTGTCCCCCAATTACTCGGGAAGAAATTGTAAACGCATGTGGAGTTGAAGACATTCATGATGGAACAAACTACTCTAGGACTGCTTGTGTAATTGCTGTTGCGAAGGCTCGTGACACATTTGAACCTTTTCTTCATCAGTTGGGGTCCAGACTGTTGTATATACTCAAGAGATTGCTTCCGATCTCTGTTTTTCTTCTTCAGAAAGATAGTGAATATCTAAGTGGCCATGAGGTGTTCCTCAGGCGTGTTGCCTCTGCCTTCAACAACTTTGCAGAATCTACTGAAAAATCATGCCGTGAAAAATGTATGGAGGACTTGGTAAGCACCACAAGATATGTTTCATGGTCTCTCCACAATAAGAGTCGGGCTGGGTTACGTCAGTTCTTAGATTCATTTGGTGGAACAGAACATTCCAATGCTTGTAATAATCCTACAGCAACTGTTCTATCACAAACAAGTGCACATGAGAAAGAAGACACAAAGTCACAACCGGATGTAAAACTCAGCCATGTGGCCTCTGGCACTGATTCTAGTTCATCCATTCAGACAACAGAAACAAAGCTTGCTGATCTTCTAGATAGTACACTCTGGAATAGGCGGCTTGCACCTTCATCTGAAAGAATTGTTTATGGCTTGGTACAACAGATATTTCATGGCATTAGAGAATATTTCTTGGTTTCCACAGAATTAAAGTTCAATTGTTTCCTTTTGATGCCCATTGTGGACAAATTGCCTGCTCTTCTCCGGGAAGACCTAGAATCTGCTTTTCAAGATGACCTGGATAATGTTTTTGACATAACCAATCTGCAGCACTCATTTGGGCAGCAAAAGAGAGAGACAGAAATTGAACTGAAAAGGATCAAGAGGCTCAAAGAGAAATTTAGAATGATACATGAGCAGCTAATTCAAAATCAAACCATGTGA

>Glyma08g07990.2   sequence type=CDS   gene model=Glyma08g07990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAAGAGGAGGAGGAGCAGCGCGAGTGGAGGCTATACGAAGGCTACAATGAGCTCCACGCGCTGGCCCAGGACTTGCACACGCCCTTCGACGCCCCCGCCGTCTTGGTCGTCGGCCACCAGACCGACGGCAAGAGCGCCCTAGTCGAGGCCCTGATGGGCTTCCAGTTCAACCACGTCGGCGGCGGCACCAAAACCCGCCGCCCCATCACCCTCCACATGAAATACGACCCTCAATGCGAGTCCCCTTCCTGCCACCTCGTCTCCGACTCCGACCCTTCTCTTTCCCACCATAAATCCCTCCCCCAAATCCAGGCATATATTGAAGCGGAAAATGCGAGGTTGGAGCAGGACACGAGCCAATTCTCTGCCAAAGAAATCATCATCAAAGTTGAATACAAGTACTGCCCCAACCTCACCATCATCGACACTCCCGGCCTCATCGCGCCGGCTCCGGGCCGGAAGAACCGTGCTCTGCAGGCGCAGGCGCGTGCCGTGGAGTCGCTGGTGCGGGAAAAGATGCAGCACAAGGAGTTCATCATCCTCTGCCTTGAAGATTGCAGCGACTGGAGCAACGCCACCACGAGGCGCGTCGTCATGCAGGTCGATCCCGAATTGGCCAGGACAGTCATCGTGTCCACCAAGCTGGACACCAGGATTCCTCAGTTTGCACGTCCTTCTGATGTTGAGGTCTTCCTCTCGCCGCCGCCGTCGACGCTCGACGGCTGCATTCTTGGTGATTCTCCGTTCTTCACGTCCGTGCCTTCTGGAAGAGTTGGGTGTGGAAGTGGTTATCTCCATAGCTCCAATGATGAGTTCAAACAGGCGGTTTGCTTCAGAGAGATAGAAGATGTTGCATCTTTGGAGGAGAAGTTGGGCAGGGCATTGTCAAAGCAGGAAAGGAGTAGGATAGGCGTGAGCAAACTTAGGCTGTTTCTGGAAGAATTGCTACAAAAGAGGTATATAAATAATGTACCATTGATCATTCCACTTCTCGAGAAGGAGTACCGGAGTGTGACAAGGAAATTAAGTGACATTAATCAAGAATTGAGCACACTTGATGAAGCCAAACTGAAGGAGAAAGGAAGAGCCTTCCATGATATGTTCTTGACCAAGTTGTCATTGTTGCTTAAAGGGACAGTTGTTGCACCTCCTGATAAGTTTGGTGAAACACTGCAAGACGAACGAATTAATGGAGGTGCATTTATTGGTGCTGATGGTGTTCAGTTCCCTCACAAGCTAATACCTAATGCAGGGATGCGTCTTTATGGTGGTGCACAATATCATCGGGCAATGGCTGAATTTCGTTTTTTGGTTGGAGGAATCAAGTGTCCCCCAATTACTCGGGAAGAAATTGTAAACGCATGTGGAGTTGAAGACATTCATGATGGAACAAACTACTCTAGGACTGCTTGTGTAATTGCTGTTGCGAAGGCTCGTGACACATTTGAACCTTTTCTTCATCAGTTGGGGTCCAGACTGTTGTATATACTCAAGAGATTGCTTCCGATCTCTGTTTTTCTTCTTCAGAAAGATAGTGAATATCTAAGTGGCCATGAGGTGTTCCTCAGGCGTGTTGCCTCTGCCTTCAACAACTTTGCAGAATCTACTGAAAAATCATGCCGTGAAAAATGTATGGAGGACTTGGTAAGCACCACAAGATATGTTTCATGGTCTCTCCACAATAAGTTCAATTGTTTCCTTTTGATGCCCATTGTGGACAAATTGCCTGCTCTTCTCCGGGAAGACCTAGAATCTGCTTTTCAAGATGACCTGGATAATGTTTTTGACATAACCAATCTGCAGCACTCATTTGGGCAGCAAAAGAGAGAGACAGAAATTGAACTGAAAAGGATCAAGAGGCTCAAAGAGAAATTTAGAATGATACATGAGCAGCTAATTCAAAATCAAACCATGTGA

Predicted protein sequences of Glyma08g07990

Limit To All Plant Sequences

>Glyma08g07990.1   sequence type=predicted peptide   gene model=Glyma08g07990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKEEEEQREWRLYEGYNELHALAQDLHTPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYDPQCESPSCHLVSDSDPSLSHHKSLPQIQAYIEAENARLEQDTSQFSAKEIIIKVEYKYCPNLTIIDTPGLIAPAPGRKNRALQAQARAVESLVREKMQHKEFIILCLEDCSDWSNATTRRVVMQVDPELARTVIVSTKLDTRIPQFARPSDVEVFLSPPPSTLDGCILGDSPFFTSVPSGRVGCGSGYLHSSNDEFKQAVCFREIEDVASLEEKLGRALSKQERSRIGVSKLRLFLEELLQKRYINNVPLIIPLLEKEYRSVTRKLSDINQELSTLDEAKLKEKGRAFHDMFLTKLSLLLKGTVVAPPDKFGETLQDERINGGAFIGADGVQFPHKLIPNAGMRLYGGAQYHRAMAEFRFLVGGIKCPPITREEIVNACGVEDIHDGTNYSRTACVIAVAKARDTFEPFLHQLGSRLLYILKRLLPISVFLLQKDSEYLSGHEVFLRRVASAFNNFAESTEKSCREKCMEDLVSTTRYVSWSLHNKSRAGLRQFLDSFGGTEHSNACNNPTATVLSQTSAHEKEDTKSQPDVKLSHVASGTDSSSSIQTTETKLADLLDSTLWNRRLAPSSERIVYGLVQQIFHGIREYFLVSTELKFNCFLLMPIVDKLPALLREDLESAFQDDLDNVFDITNLQHSFGQQKRETEIELKRIKRLKEKFRMIHEQLIQNQTM*

>Glyma08g07990.2   sequence type=predicted peptide   gene model=Glyma08g07990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKEEEEQREWRLYEGYNELHALAQDLHTPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYDPQCESPSCHLVSDSDPSLSHHKSLPQIQAYIEAENARLEQDTSQFSAKEIIIKVEYKYCPNLTIIDTPGLIAPAPGRKNRALQAQARAVESLVREKMQHKEFIILCLEDCSDWSNATTRRVVMQVDPELARTVIVSTKLDTRIPQFARPSDVEVFLSPPPSTLDGCILGDSPFFTSVPSGRVGCGSGYLHSSNDEFKQAVCFREIEDVASLEEKLGRALSKQERSRIGVSKLRLFLEELLQKRYINNVPLIIPLLEKEYRSVTRKLSDINQELSTLDEAKLKEKGRAFHDMFLTKLSLLLKGTVVAPPDKFGETLQDERINGGAFIGADGVQFPHKLIPNAGMRLYGGAQYHRAMAEFRFLVGGIKCPPITREEIVNACGVEDIHDGTNYSRTACVIAVAKARDTFEPFLHQLGSRLLYILKRLLPISVFLLQKDSEYLSGHEVFLRRVASAFNNFAESTEKSCREKCMEDLVSTTRYVSWSLHNKFNCFLLMPIVDKLPALLREDLESAFQDDLDNVFDITNLQHSFGQQKRETEIELKRIKRLKEKFRMIHEQLIQNQTM*

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