Glyma08g07920 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g07920

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5668846
stop:	5675634
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g07920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22040	AT	Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein \| chr1:7768370-7769797 FORWARD LENGTH=475	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24414	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24414:SF196	Panther		JGI		ISS
PF00646	PFAM	F-box domain	JGI		ISS
PF01344	PFAM	Kelch motif	JGI		ISS
UniRef100_G7INS5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein n=1 Tax=Medicago truncatula RepID=G7INS5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KR50	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KR50_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g07920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07920

Paralog	Evidence	Comments
Glyma05g24760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g074400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g07920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g07920

Limit To All Plant Sequences

>Glyma08g07920.1   sequence type=CDS   gene model=Glyma08g07920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAATATACTGAATCTAAACAATTCAAAGACTAGACGGAATGATTCCCATGGGGTCTTGCAAGGTGAATCCTGCAAGAGACAGAGGTTGTCACCAAACTCTTGTGAGGACAACCCAAGACTGATTCCGTCCCTTCCTGATGAGATATCAATACAGATTCTAGCTAGAGTTCCTCGGATTTATTATTTGAATCTGAAGTTAGTTTGTCGTGCTTGGAAGGAAACCTTTGTTAGTTCTGAACTATTTTGTGTGAGAAAAGAGCTTGGAAGCATGGAGGAATGGCTCTACATTTTGACAAAGGTCAACGATGATAAGCTTTTATGGTATGCCTTGGACCCTCTTTCCAGAAGATGGCAAAAGTTGCCGCCAATGCCAAAAGTTGGGTTTGAAGATGAAACAAAGAAAGGTTTGATTTCCTTTCCCCTTCGGATGTGGAGCATGATGGGTTCAAGTATTCGAATTGTTGATGTCATAATGAGCTGGCTTGGGAGGAGAGATGCCCTGGACTGGATGCCTTTTTGTGGTTGCTCCATAGGAGCTGTTGATGGTTGCATCTATGCATTAGGAGGATTTTCAAGAGCTTCAGCAATGAAATATGTTTGGCAGTATGATCCCATTAAAAACTCTTGGGCTGAGGCTAGTCCAATGTCAGTTGGCAGAGCCTATTGCAAGACAGGTATATTAAATAATAAGCTTTATGTTGTTGGAGGGGTTACTAGGGGTCGTGGTGGACTAAGCCCTCTGCAATCTGCAGAAGTATATGACCCTCATACAGGCATGTGGTCCCTGTTACCTAGCATGCCTTTTGCAAGAGCTCAAGTGTTGCCAACTGCTTTTTTGGCTGACTTACTCAAGCCTATTGCCACAGGAATGGCTTCATACAAAGGAAGGTTATTTGTTCCTCAGAGTTTGTATTGCTGGCCATTTTTTGTTGATGTTGGGGGTGAAGTTTATGATCCAAATTTAAATTCATGGCTTGAAATGCCAATTGGTATGGGTGAAGGCTGGCCTGCAAGGCAAGCTGGAACGAAATTGAGTGTTACGGTCGATGATGATCTATATGCACTTGATCCTTCAAATTCTCTTGACAGTGCAAAGATCAAGGTATATGATTATGAAGGTGATACTTGGAAAGTTGCAGCAGGAGATGTTCCTATTCATGATTTCACCGAATCGGAATCTCCTTATCTCTTGGCTGGTTTACTTGGAAAACTTCATGTAATAACTAAAGATGCTAATCACAACATTACAGTGTTGCAGGCTGACATGCAAAATGAACATGCTGAGTCAGCTTTCTCTCAATCAATATTGTCATCACCAGATAACTCGATCAGTGAAGATGCTGAATCTTCTGCAGAAACACAGGGAGAATTTTGGAAGGTTCTTGCAACTAGGAGTGGTAGATCTGCTGAACTAGTTAACTGTCAATCCCTTAAAATATGA

Predicted protein sequences of Glyma08g07920

Limit To All Plant Sequences

>Glyma08g07920.1   sequence type=predicted peptide   gene model=Glyma08g07920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNILNLNNSKTRRNDSHGVLQGESCKRQRLSPNSCEDNPRLIPSLPDEISIQILARVPRIYYLNLKLVCRAWKETFVSSELFCVRKELGSMEEWLYILTKVNDDKLLWYALDPLSRRWQKLPPMPKVGFEDETKKGLISFPLRMWSMMGSSIRIVDVIMSWLGRRDALDWMPFCGCSIGAVDGCIYALGGFSRASAMKYVWQYDPIKNSWAEASPMSVGRAYCKTGILNNKLYVVGGVTRGRGGLSPLQSAEVYDPHTGMWSLLPSMPFARAQVLPTAFLADLLKPIATGMASYKGRLFVPQSLYCWPFFVDVGGEVYDPNLNSWLEMPIGMGEGWPARQAGTKLSVTVDDDLYALDPSNSLDSAKIKVYDYEGDTWKVAAGDVPIHDFTESESPYLLAGLLGKLHVITKDANHNITVLQADMQNEHAESAFSQSILSSPDNSISEDAESSAETQGEFWKVLATRSGRSAELVNCQSLKI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain