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Report for Sequence Feature Glyma08g07911

Feature Type:gene_model
Chromosome:Gm08
Start:5663765
stop:5666067
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g07911
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G37390AT Annotation by Michelle Graham. TAIR10: Chloroplast-targeted copper chaperone protein | chr2:15694300-15695461 FORWARD LENGTH=258 SoyBaseE_val: 2.00E-27ISS
GO:0030001GO-bp Annotation by Michelle Graham. GO Biological Process: metal ion transport SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG1603 KOG Copper chaperone JGI ISS
PTHR22814Panther COPPER TRANSPORT PROTEIN ATOX1-RELATED JGI ISS
PTHR22814:SF50Panther SUBFAMILY NOT NAMED JGI ISS
PF00403PFAM Heavy-metal-associated domain JGI ISS
UniRef100_F4IQW1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast-targeted copper chaperone protein n=1 Tax=Arabidopsis thaliana RepID=F4IQW1_ARATH SoyBaseE_val: 7.00E-25ISS
UniRef100_UPI0002338565UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338565 related cluster n=1 Tax=unknown RepID=UPI0002338565 SoyBaseE_val: 4.00E-108ISS

Expression Patterns of Glyma08g07911
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g07911 not represented in the dataset
Glyma08g07911 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07911
ParalogEvidenceComments
Glyma05g24751 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07911 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g074300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g07911
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g07911
>Glyma08g07911.1   sequence type=CDS   gene model=Glyma08g07911   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGAGCCTGAAAAGCAGTGAAAGGAAAATGATGAAAAGGGGTTTCATGTGCCACTCTCGGGCTTCAACAGCTGTGTGCATGAGTACTCGTGACCCTCGATCTGTAGTTGTGCCTAAGAAGCTTGAAAGAAGAGTGTTTCTTGATGATACAAGGTTGATCAACTATGCCAAGTACTCCAAACTTGTTGAGCCTCCAAGGTCTAGTCCAGTTCCAAAGATCAAGCTTAGAGGGCAGGAACAAGATCAAGCCAATAATGAACCTAGGGAATTTCAGAAAAAACAGACAGATAATAATGTCTTTCAGGTGGTTGTGATGCGGGTTGCAATTCATTGTCAAGGATGTGCTGGAAAGGTGAAAAAACATCTGTCTAAGATGGAAGGAGTTACATCATTTAGTATAGACGTAGAATCTAAGAGGGTGACAGTGATGGGGCACATTTCACCAGTGGAAGTCCTTGAGAGTATTTCAAAGGTGAAAAGGGCAGAGTTCTGGACTGCTTGTTAA
Predicted protein sequences of Glyma08g07911
>Glyma08g07911.1   sequence type=predicted peptide   gene model=Glyma08g07911   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSLKSSERKMMKRGFMCHSRASTAVCMSTRDPRSVVVPKKLERRVFLDDTRLINYAKYSKLVEPPRSSPVPKIKLRGQEQDQANNEPREFQKKQTDNNVFQVVVMRVAIHCQGCAGKVKKHLSKMEGVTSFSIDVESKRVTVMGHISPVEVLESISKVKRAEFWTAC*






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