Glyma08g07890 - SoyBase

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Report for Sequence Feature Glyma08g07890

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5655579
stop:	5658103
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g07890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64080	AT	Annotation by Michelle Graham. TAIR10: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein \| chr5:25645475-25646638 REVERSE LENGTH=182	SoyBase	E_val: 1.00E-45	ISS
GO:0006869	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0046658	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane	SoyBase	N/A	ISS
GO:0008289	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipid binding	SoyBase	N/A	ISS
PF00234	PFAM	Protease inhibitor/seed storage/LTP family	JGI		ISS
UniRef100_G7KE52	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Non-specific lipid-transfer protein n=1 Tax=Medicago truncatula RepID=G7KE52_MEDTR	SoyBase	E_val: 8.00E-84	ISS
UniRef100_I1KR47	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KR47_SOYBN	SoyBase	E_val: 2.00E-123	ISS

Expression Patterns of Glyma08g07890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07890

Paralog	Evidence	Comments
Glyma05g24730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g074100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g07890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g07890

Limit To All Plant Sequences

>Glyma08g07890.1   sequence type=CDS   gene model=Glyma08g07890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCAAAATTGACCCTCATTGCGTTGGTTCTCGCGGTGGCCCTGTGCGCCGTTGATCTAACCCATAGCGCATCAGCATCCTCCCCTCACGCGCCAGCGCCCTCCGTGGACTGCACCAACCTCGTCCTCACCATGGCCGACTGCTTGTCCTTCGTCACCAACGGTAGCACCGTCACCAAGCCAGAGGGCACATGCTGCTCCGGTTTGAAATCTGTTCTCAAAACTGCTCCGGCGTGCCTCTGCGAGGCTTTCAAGAGCAGCGCTCAGTTCGGCGTCGTTTTGAATGTCACCAAGGCCACCTCTCTCCCCGCCGCCTGCAAAGTTTCTGCTCCTTCTGCCACCAACTGTGGATTGTCTGAAACGCCTGCTGCTGCTCCTGCTGGAGGCCTCTCTCCACAAGCTTCTCCATCTCCTCAACAAGCAGATGCTTCAACTAATGGTCCTGTAAATGAGATATCTCCAGCACCAGCACCAGCCCAAGGGAACACAGCATCAGCATTATTCCCAATTTCTGCTGGGTCCTTGCTTCTTGGCATATTGGTAGCCACATTCTCAGGCTTCTGA

Predicted protein sequences of Glyma08g07890

Limit To All Plant Sequences

>Glyma08g07890.1   sequence type=predicted peptide   gene model=Glyma08g07890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKLTLIALVLAVALCAVDLTHSASASSPHAPAPSVDCTNLVLTMADCLSFVTNGSTVTKPEGTCCSGLKSVLKTAPACLCEAFKSSAQFGVVLNVTKATSLPAACKVSAPSATNCGLSETPAAAPAGGLSPQASPSPQQADASTNGPVNEISPAPAPAQGNTASALFPISAGSLLLGILVATFSGF*

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