Glyma08g07860 - SoyBase

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Report for Sequence Feature Glyma08g07860

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5637903
stop:	5640599
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g07860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64090	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \|	SoyBase	E_val: 1.00E-138	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4688	KOG	Putative beta-catenin-Tcf/Lef signaling pathway component DRCTNNB1A	JGI		ISS
PTHR24882	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24882:SF20	Panther		JGI		ISS
PF09790	PFAM	Hyccin	JGI		ISS
UniRef100_I1KR44	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KR44_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2RA18	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2RA18_ORYSJ	SoyBase	E_val: 2.00E-92	ISS

Expression Patterns of Glyma08g07860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07860

Paralog	Evidence	Comments
Glyma05g24630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g073800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g07860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g07860

Limit To All Plant Sequences

>Glyma08g07860.2   sequence type=CDS   gene model=Glyma08g07860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTCCACCGCAGCGACTCATCATCGTCCCCGTCTTCATCCACGCCCACACCCAACAACGCCGATCCCAATAAAACCTCTTCTTCAGACCCAATGCATTCATGGTGGGAATCCGTCTCTAAAGCCCGTTCACGAATCCACGCCCTCGCCGCCATCCTCCCCTCCTCCTCCTCCGACTCCCTCTCCTCTCTCGCCGACTCCGACCGCCCTGCTCTCTCACTCTTGTCCTCCCCCGCTGCCTACGCCGCCGTCTCCTCTTCCCTCTCCGGCTCCCACTCCGACCCCCTCTGCCACTGGCTCTACGACACCTTCCTCTCCTCCGACCCCCACCTCCGCCTCGTCGTCCTCTCCTTCGTCCCCCTCCTCTCTGGCCTCTACCTCTCCCGAATCCACTCCCCTGAACCGCCGTCCCTCGCCGGGTTCGAAGCCGTCCTCCTCGCCCTCTACGCCGCCGAGACCAAATCCCGAAACGGCAAACCCCTCGTGGTCACAATCCCCGACCTCTCCCACCCCTCCATCTACCATGCGCCCCTCCGCAAACCCCAATCCCAAACCCTAACCCTAGCCTCAACACCCTCGGTTGGACTCATTTCGCCCCCTTTAGAACCCCAGCTCGGCGTCAAATCCACCAAGCGCGCCTCCATCGTCGGCGTTGCGCTACACTCCTTCTTCTCCCAGATCTCCCACATGCCCGCCTGGTCCAAGCTCGAATTCTGCCAATTCGCCGCAGCCTGGGCCGGCTCCGCCCACTGTCCCTGCCGCAACGAGCTCGACCGCGATGGCAAAATCGAGGATTTCGCCACCGCCATTGAGAACGTTCGAATTCGCGATGGCGATTATCTGGAAGAAGGGAAAGGGGAGAGGATTCCCTTGCCGTGGGAGATTCTGCAGCCTTCGCTCAGAATCCTGGGGCACTGTTTATTGGGGCCTTTGAACTCTCAGGATGTGAAGGATGCTGCTTCCTTTGCGGTGCGGTGCTTGTACGCCCGTGCTTCCCACGATTTGGTGCCGCAGGCAATACTCGCCACTAGGAGTCTCATTCAGCTTGATGTGAGGACTAGAGAGGCTGCCAGGGCGAATGCCGCCACTAACTCGAATGCCAATACGCCCACCAAGGCCAAGAAGCCGGAGATTCTTCTGGTTTCCAAGTGA

Predicted protein sequences of Glyma08g07860

Limit To All Plant Sequences

>Glyma08g07860.2   sequence type=predicted peptide   gene model=Glyma08g07860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFHRSDSSSSPSSSTPTPNNADPNKTSSSDPMHSWWESVSKARSRIHALAAILPSSSSDSLSSLADSDRPALSLLSSPAAYAAVSSSLSGSHSDPLCHWLYDTFLSSDPHLRLVVLSFVPLLSGLYLSRIHSPEPPSLAGFEAVLLALYAAETKSRNGKPLVVTIPDLSHPSIYHAPLRKPQSQTLTLASTPSVGLISPPLEPQLGVKSTKRASIVGVALHSFFSQISHMPAWSKLEFCQFAAAWAGSAHCPCRNELDRDGKIEDFATAIENVRIRDGDYLEEGKGERIPLPWEILQPSLRILGHCLLGPLNSQDVKDAASFAVRCLYARASHDLVPQAILATRSLIQLDVRTREAARANAATNSNANTPTKAKKPEILLVSK*

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