Glyma08g07850 - SoyBase

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Report for Sequence Feature Glyma08g07850

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5626526
stop:	5629941
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g07850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G13840	AT	Annotation by Michelle Graham. TAIR10: Polymerase/histidinol phosphatase-like \| chr2:5788616-5791057 REVERSE LENGTH=434	SoyBase	E_val: 0	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity	SoyBase	N/A	ISS
PF02811	PFAM	PHP domain	JGI		ISS
UniRef100_D7L064	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PHP domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L064_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1KR42	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KR42_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g07850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07850

Paralog	Evidence	Comments
Glyma05g24620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g073700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g07850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g07850

Limit To All Plant Sequences

>Glyma08g07850.2   sequence type=transcript   gene model=Glyma08g07850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAGAGAGTATTGGGGTACACCTGTCTCTGTCTGATCATAACCTTGAGGACACCTGTGACCTGAACACTACCCTTCTCTCTCTGTTTATGTTACTACCCTAACAAGTTTGACAAACCCCAAAAAAGAATCAAACTTTCCCTCAAATTTTCACTCTTTTCTGCACCGCCAGTGATGGGAGATGGGTGCGCGGTTGAGGGCACCACGGGGAATTCCAATTCTAATAACAATAATAACAATAAGAAGAAGAACAAGAAGAAGAAGAACAGGGGTGGGAGCAAGAAGAAGATGACCCACGAACAGGTCTTGGCCTTCAAGTTAGTGAGTGAGTGGGTTTTCTTGGATCACCCTTCTGCTTCGTCTTCATCTTCTTCTGCTGCTTCCTGTGTTGTCGATGATTTTGGTGTTCAGAAGCCTCTAGGGAGAGGCGGGGAAAAGCTCCTCTTTGAATTGCATTCGCACTCCAAATTCAGCGATGGCTTCTTCTCCCCTTCTAAAGTTGTTGAAAGAGCTCACATCAACGGCATCATGACACTATGTCAGGCATTCCTGAAGCTGTAGAATCAGCTCGTAAATATGGCATCAAGATAATCCCAGGTGTTGAAATTAGTACCATATTTTCTCCAAGAGGAGACTCTGAAGTAGAGGAACCAGTTCACATTTTAGCATACTACAGCAGTATTGGACCATCAAGGTTTGAGGAGCTGGACAAGTTTCTATCAAATATAAGGGATGGACGTTTTCTTCGTGCGCAGAACATTGTCTTAAAACTGAACAAGCTCAAGTTGCCTCTTAAATGGGAGCATGTTTGCAGGATTGCCGGCAAGGGGGTTGCCCCTGGGAGGCTTCATGTCGCCCGTGCCATGCTTGAAGCTGGTTATGTAGAGAATCTCAGACAAGCCTTCGCTCGGTATCTCTTTGACGGTGGACCTGCTTACTCCACGGGAAGTGAGCCTCTGGCAGAAGAAGCAATAAAAATGATTAGTCATACTGGGGGTGTTGCTGTTCTGGCTCATCCATGGGCATTGAAAAATCCAGTTCCCATTGTTAGAAGGTTAAAAGAAGCTGGTCTTCATGGGATGGAGGTCTACAAAAGTGATGGAAGGCTGGCAGCATATAGTGACTTGGCTGATGCCTATGGACTTCTAAAGATTGGAGGGTCAGACTATCATGGGAGAGGAGGGCACAATGAATCTGAGCTGGGAAGTGTGAACCTTCCAGTGATAGTGTTGCATGACTTCCTTAAGGTAGCTCGGCCTATCTGGTGCAATGCCATCAGGGAGATATTAGAGTGTTATGCTGAGGAGCCTTCTGATTCTAACCTAGCAACAATTACTAGGTTTGGGAGAACCTGGAGTTTTAAGGGAGGTTCACCCTTTAGTTGTGGACAGGACTTGATTGATCATTGTTTACCTCTCTGGTTGTCTAGCCAGGAGATGGAAAATGCAGAGTTTGAAGCTATCAAGTTAAAGCTTTCCAATGTTTCAGTTAGTCAGGGAGGAATTCAGGTTCTCATAGAGACTAAATAAAAGTTGTGTAACTTGATATGTCACCTTAAATCATTCTCAGTATTGTTGGCAGCCAAATCTTAATATTAAATTTGTTAGTCAAGTTCAAATGTCTATTGATTCTTTTTGAAAATTTTCTATGACCTTTGAGCAAACATTTCTCATATTATTGTTTTATCTTCTACACTGATGTATTTTTCTTTTCTCTATTTTTTCTTAATGCAAACTTGTCAGAAAAGGTTGTATGTACAAAAATTGAAACAGGAGGGTTTCCTTCTTCAATGATTGATACATGTTTCGAAATTTGGATGCCGTTCTTATTGAGTAGTTTGTGTAAATCTTCTAAAGGATTCG

Coding sequences of Glyma08g07850

Limit To All Plant Sequences

>Glyma08g07850.1   sequence type=CDS   gene model=Glyma08g07850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGATGGGTGCGCGGTTGAGGGCACCACGGGGAATTCCAATTCTAATAACAATAATAACAATAAGAAGAAGAACAAGAAGAAGAAGAACAGGGGTGGGAGCAAGAAGAAGATGACCCACGAACAGGTCTTGGCCTTCAAGTTAGTGAGTGAGTGGGTTTTCTTGGATCACCCTTCTGCTTCGTCTTCATCTTCTTCTGCTGCTTCCTGTGTTGTCGATGATTTTGGTGTTCAGAAGCCTCTAGGGAGAGGCGGGGAAAAGCTCCTCTTTGAATTGCATTCGCACTCCAAATTCAGCGATGGCTTCTTCTCCCCTTCTAAAGTTGTTGAAAGAGCTCACATCAACGGCGTGAAAGTTCTTGCTCTGACAGATCATGACACTATGTCAGGCATTCCTGAAGCTGTAGAATCAGCTCGTAAATATGGCATCAAGATAATCCCAGGTGTTGAAATTAGTACCATATTTTCTCCAAGAGGAGACTCTGAAGTAGAGGAACCAGTTCACATTTTAGCATACTACAGCAGTATTGGACCATCAAGGTTTGAGGAGCTGGACAAGTTTCTATCAAATATAAGGGATGGACGTTTTCTTCGTGCGCAGAACATTGTCTTAAAACTGAACAAGCTCAAGTTGCCTCTTAAATGGGAGCATGTTTGCAGGATTGCCGGCAAGGGGGTTGCCCCTGGGAGGCTTCATGTCGCCCGTGCCATGCTTGAAGCTGGTTATGTAGAGAATCTCAGACAAGCCTTCGCTCGGTATCTCTTTGACGGTGGACCTGCTTACTCCACGGGAAGTGAGCCTCTGGCAGAAGAAGCAATAAAAATGATTAGTCATACTGGGGGTGTTGCTGTTCTGGCTCATCCATGGGCATTGAAAAATCCAGTTCCCATTGTTAGAAGGTTAAAAGAAGCTGGTCTTCATGGGATGGAGGTCTACAAAAGTGATGGAAGGCTGGCAGCATATAGTGACTTGGCTGATGCCTATGGACTTCTAAAGATTGGAGGGTCAGACTATCATGGGAGAGGAGGGCACAATGAATCTGAGCTGGGAAGTGTGAACCTTCCAGTGATAGTGTTGCATGACTTCCTTAAGGTAGCTCGGCCTATCTGGTGCAATGCCATCAGGGAGATATTAGAGTGTTATGCTGAGGAGCCTTCTGATTCTAACCTAGCAACAATTACTAGGTTTGGGAGAACCTGGAGTTTTAAGGGAGGTTCACCCTTTAGTTGTGGACAGGACTTGATTGATCATTGTTTACCTCTCTGGTTGTCTAGCCAGGAGATGGAAAATGCAGAGTTTGAAGCTATCAAGTTAAAGCTTTCCAATGTTTCAGTTAGTCAGGGAGGAATTCAGGTTCTCATAGAGACTAAATAA

>Glyma08g07850.2   sequence type=CDS   gene model=Glyma08g07850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGCATTCCTGAAGCTGTAGAATCAGCTCGTAAATATGGCATCAAGATAATCCCAGGTGTTGAAATTAGTACCATATTTTCTCCAAGAGGAGACTCTGAAGTAGAGGAACCAGTTCACATTTTAGCATACTACAGCAGTATTGGACCATCAAGGTTTGAGGAGCTGGACAAGTTTCTATCAAATATAAGGGATGGACGTTTTCTTCGTGCGCAGAACATTGTCTTAAAACTGAACAAGCTCAAGTTGCCTCTTAAATGGGAGCATGTTTGCAGGATTGCCGGCAAGGGGGTTGCCCCTGGGAGGCTTCATGTCGCCCGTGCCATGCTTGAAGCTGGTTATGTAGAGAATCTCAGACAAGCCTTCGCTCGGTATCTCTTTGACGGTGGACCTGCTTACTCCACGGGAAGTGAGCCTCTGGCAGAAGAAGCAATAAAAATGATTAGTCATACTGGGGGTGTTGCTGTTCTGGCTCATCCATGGGCATTGAAAAATCCAGTTCCCATTGTTAGAAGGTTAAAAGAAGCTGGTCTTCATGGGATGGAGGTCTACAAAAGTGATGGAAGGCTGGCAGCATATAGTGACTTGGCTGATGCCTATGGACTTCTAAAGATTGGAGGGTCAGACTATCATGGGAGAGGAGGGCACAATGAATCTGAGCTGGGAAGTGTGAACCTTCCAGTGATAGTGTTGCATGACTTCCTTAAGGTAGCTCGGCCTATCTGGTGCAATGCCATCAGGGAGATATTAGAGTGTTATGCTGAGGAGCCTTCTGATTCTAACCTAGCAACAATTACTAGGTTTGGGAGAACCTGGAGTTTTAAGGGAGGTTCACCCTTTAGTTGTGGACAGGACTTGATTGATCATTGTTTACCTCTCTGGTTGTCTAGCCAGGAGATGGAAAATGCAGAGTTTGAAGCTATCAAGTTAAAGCTTTCCAATGTTTCAGTTAGTCAGGGAGGAATTCAGGTTCTCATAGAGACTAAATAA

Predicted protein sequences of Glyma08g07850

Limit To All Plant Sequences

>Glyma08g07850.1   sequence type=predicted peptide   gene model=Glyma08g07850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDGCAVEGTTGNSNSNNNNNNKKKNKKKKNRGGSKKKMTHEQVLAFKLVSEWVFLDHPSASSSSSSAASCVVDDFGVQKPLGRGGEKLLFELHSHSKFSDGFFSPSKVVERAHINGVKVLALTDHDTMSGIPEAVESARKYGIKIIPGVEISTIFSPRGDSEVEEPVHILAYYSSIGPSRFEELDKFLSNIRDGRFLRAQNIVLKLNKLKLPLKWEHVCRIAGKGVAPGRLHVARAMLEAGYVENLRQAFARYLFDGGPAYSTGSEPLAEEAIKMISHTGGVAVLAHPWALKNPVPIVRRLKEAGLHGMEVYKSDGRLAAYSDLADAYGLLKIGGSDYHGRGGHNESELGSVNLPVIVLHDFLKVARPIWCNAIREILECYAEEPSDSNLATITRFGRTWSFKGGSPFSCGQDLIDHCLPLWLSSQEMENAEFEAIKLKLSNVSVSQGGIQVLIETK*

>Glyma08g07850.2   sequence type=predicted peptide   gene model=Glyma08g07850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGIPEAVESARKYGIKIIPGVEISTIFSPRGDSEVEEPVHILAYYSSIGPSRFEELDKFLSNIRDGRFLRAQNIVLKLNKLKLPLKWEHVCRIAGKGVAPGRLHVARAMLEAGYVENLRQAFARYLFDGGPAYSTGSEPLAEEAIKMISHTGGVAVLAHPWALKNPVPIVRRLKEAGLHGMEVYKSDGRLAAYSDLADAYGLLKIGGSDYHGRGGHNESELGSVNLPVIVLHDFLKVARPIWCNAIREILECYAEEPSDSNLATITRFGRTWSFKGGSPFSCGQDLIDHCLPLWLSSQEMENAEFEAIKLKLSNVSVSQGGIQVLIETK*

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