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Report for Sequence Feature Glyma08g07793

Feature Type:gene_model
Chromosome:Gm08
Start:5592303
stop:5595915
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g07793
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G21090AT Annotation by Michelle Graham. TAIR10: MITOCHONDRIAL FERREDOXIN 2 | chr4:11256663-11258269 REVERSE LENGTH=197 SoyBaseE_val: 2.00E-81ISS
GO:0019243GO-bp Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0051536GO-mf Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding SoyBaseN/AISS
GO:0051537GO-mf Annotation by Michelle Graham. GO Molecular Function: 2 iron, 2 sulfur cluster binding SoyBaseN/AISS
KOG3309 KOG Ferredoxin JGI ISS
PTHR23426Panther FERREDOXIN/ADRENODOXIN JGI ISS
PTHR23426:SF1Panther ADRENODOXIN JGI ISS
PF00111PFAM 2Fe-2S iron-sulfur cluster binding domain JGI ISS
UniRef100_G7JI11UniRef Annotation by Michelle Graham. Most informative UniRef hit: 2Fe-2S ferredoxin n=1 Tax=Medicago truncatula RepID=G7JI11_MEDTR SoyBaseE_val: 5.00E-98ISS
UniRef100_I1MS45UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MS45_SOYBN SoyBaseE_val: 2.00E-124ISS

Expression Patterns of Glyma08g07793
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g07793 not represented in the dataset
Glyma08g07793 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g07793 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g073200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g07793
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma08g07793
>Glyma08g07793.2   sequence type=transcript   gene model=Glyma08g07793   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGATTTTACAACTCATGCTTTGTGGCTCTTCAGGCTTTCTCATTCTTCTTATTAAGTGGGTTTCTTAAACCCTGCCTAAAATCACAATGCTAAATTCCAAACTAGCTAGAGTCGGAGCTTCGATCGCTAAACACCTCTACACAATTGGATATATTCGAAGCGCAAGATATCATTACAAGCAACGTACGTTTCAACAGCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGCATAATTTCCTTTCAACAATGACTACTAACAACACTACTGAGGAAGGGAGTGAACAAGAACAAATGATATCTGTAACTTTTATTGACAAGGATGGTGAGGAGAAGCATATCAAAGTCCCTGTTGGAATGTCTATGTTAGAAGCAGCTCATGAAAACGACATTGAACTAGAAGGAGCATGTGAAGGCTCGATTGCGTGTTCAACTTGCCATGTTATAGTCACGGACTTGGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACATCACGTCTGGGTTGCCAAGTGATTGCAAAACCTGAACTTGATGGAATTCGTTTAGCTATTCCTGCTGCCACTCGGAACTTCGCTGTTGATGGTTATGTGCCGAAACCACATTGAGTCATTTTTTTGGGTTCAATGCAAAGAGTGCCGCTTTCAGTTTTGTATCCTTACCGATTTAGATAAATTAGCATTTATTGATATCATAGGCATTATTTTTGTATTTTCCGTGTTCACGGAGCACCTCTATATATATATATATATATATATATATATATATATATATATATATATATATATCAATTTATAAAGAGATCATGTTGTAATTTTGGACGGGCTACACTTTTGCATGTC

>Glyma08g07793.3   sequence type=transcript   gene model=Glyma08g07793   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGATTTTACAACTCATGCTTTGTGGCTCTTCAGGCTTTCTCATTCTTCTTATTAAGTGGTGCCTTGTTTTGTCTGGTTTCTCTTGCCTGTTAGAGTTAATTTTTCAAATTACATATTTTTTTTTGTCTTTTTTTAATATATCAATTTATTTATTTTTTTCCTCTGCAATTTTAGGGTTTCTTAAACCCTGCCTAAAATCACAATGCTAAATTCCAAACTAGCTAGAGTCGGAGCTTCGATCGCTAAACACCTCTACACAATTGGATATATTCGAAGCGCAAGATATCATTACAAGCAACGTACGTTTCAACAGCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGCATAATTTCCTTTCAACAATGACTACTAACAACACTACTGAGGAAGGGAGTGAACAAGAACAAATGATATCTGTAACTTTTATTGACAAGGATGGTGAGGAGAAGCATATCAAAGTCCCTGTTGGAATGTCTATGTTAGAAGCAGCTCATGAAAACGACATTGAACTAGAAGGAGCATGTGAAGGCTCGATTGCGTGTTCAACTTGCCATGTTATAGTCACGGACTTGGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACATCACGTCTGGGTTGCCAAGTGATTGCAAAACCTGAACTTGATGGAATTCGTTTAGCTATTCCTGCTGCCACTCGGAACTTCGCTGTTGATGGTTATGTGCCGAAACCACATTGAGTCATTTTTTTGGGTTCAATGCAAAGAGTGCCGCTTTCAGTTTTGTATCCTTACCGATTTAGATAAATTAGCATTTATTGATATCATAGGCATTATTTTTGTATTTTCCGTGTTCACGGAGCACCTCTATATATATATATATATATATATATATATATATATATATATATATATATATATCAATTTATAAAGAGATCATGTTGTAATTTTGGACGGGCTACACTTTTGCATGTC
Coding sequences of Glyma08g07793
>Glyma08g07793.1   sequence type=CDS   gene model=Glyma08g07793   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAAATTCCAAACTAGCTAGAGTCGGAGCTTCGATCGCTAAACACCTCTACACAATTGGATATATTCGAAGCGCAAGATATCATTACAAGCAACGTACGGTGTTTCAACAGCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGCATAATTTCCTTTCAACAATGACTACTAACAACACTACTGAGGAAGGGAGTGAACAAGAACAAATGATATCTGTAACTTTTATTGACAAGGATGGTGAGGAGAAGCATATCAAAGTCCCTGTTGGAATGTCTATGTTAGAAGCAGCTCATGAAAACGACATTGAACTAGAAGGAGCATGTGAAGGCTCGATTGCGTGTTCAACTTGCCATGTTATAGTCACGGACTTGGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACATCACGTCTGGGTTGCCAAGTGATTGCAAAACCTGAACTTGATGGAATTCGTTTAGCTATTCCTGCTGCCACTCGGAACTTCGCTGTTGATGGTTATGTGCCGAAACCACATTGA

>Glyma08g07793.2   sequence type=CDS   gene model=Glyma08g07793   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAAATTCCAAACTAGCTAGAGTCGGAGCTTCGATCGCTAAACACCTCTACACAATTGGATATATTCGAAGCGCAAGATATCATTACAAGCAACGTACGTTTCAACAGCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGCATAATTTCCTTTCAACAATGACTACTAACAACACTACTGAGGAAGGGAGTGAACAAGAACAAATGATATCTGTAACTTTTATTGACAAGGATGGTGAGGAGAAGCATATCAAAGTCCCTGTTGGAATGTCTATGTTAGAAGCAGCTCATGAAAACGACATTGAACTAGAAGGAGCATGTGAAGGCTCGATTGCGTGTTCAACTTGCCATGTTATAGTCACGGACTTGGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACATCACGTCTGGGTTGCCAAGTGATTGCAAAACCTGAACTTGATGGAATTCGTTTAGCTATTCCTGCTGCCACTCGGAACTTCGCTGTTGATGGTTATGTGCCGAAACCACATTGA

>Glyma08g07793.3   sequence type=CDS   gene model=Glyma08g07793   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAAATTCCAAACTAGCTAGAGTCGGAGCTTCGATCGCTAAACACCTCTACACAATTGGATATATTCGAAGCGCAAGATATCATTACAAGCAACGTACGTTTCAACAGCATTCATTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGCATAATTTCCTTTCAACAATGACTACTAACAACACTACTGAGGAAGGGAGTGAACAAGAACAAATGATATCTGTAACTTTTATTGACAAGGATGGTGAGGAGAAGCATATCAAAGTCCCTGTTGGAATGTCTATGTTAGAAGCAGCTCATGAAAACGACATTGAACTAGAAGGAGCATGTGAAGGCTCGATTGCGTGTTCAACTTGCCATGTTATAGTCACGGACTTGGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACATCACGTCTGGGTTGCCAAGTGATTGCAAAACCTGAACTTGATGGAATTCGTTTAGCTATTCCTGCTGCCACTCGGAACTTCGCTGTTGATGGTTATGTGCCGAAACCACATTGA
Predicted protein sequences of Glyma08g07793
>Glyma08g07793.1   sequence type=predicted peptide   gene model=Glyma08g07793   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNSKLARVGASIAKHLYTIGYIRSARYHYKQRTVFQQHSFTKLYKGAMIEKHNFLSTMTTNNTTEEGSEQEQMISVTFIDKDGEEKHIKVPVGMSMLEAAHENDIELEGACEGSIACSTCHVIVTDLEQYNKLEDPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGIRLAIPAATRNFAVDGYVPKPH*

>Glyma08g07793.2   sequence type=predicted peptide   gene model=Glyma08g07793   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNSKLARVGASIAKHLYTIGYIRSARYHYKQRTFQQHSFTKLYKGAMIEKHNFLSTMTTNNTTEEGSEQEQMISVTFIDKDGEEKHIKVPVGMSMLEAAHENDIELEGACEGSIACSTCHVIVTDLEQYNKLEDPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGIRLAIPAATRNFAVDGYVPKPH*

>Glyma08g07793.3   sequence type=predicted peptide   gene model=Glyma08g07793   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNSKLARVGASIAKHLYTIGYIRSARYHYKQRTFQQHSFTKLYKGAMIEKHNFLSTMTTNNTTEEGSEQEQMISVTFIDKDGEEKHIKVPVGMSMLEAAHENDIELEGACEGSIACSTCHVIVTDLEQYNKLEDPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGIRLAIPAATRNFAVDGYVPKPH*






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