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Report for Sequence Feature Glyma08g07750

Feature Type:gene_model
Chromosome:Gm08
Start:5571929
stop:5572488
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g07750
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18390AT Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr5:6090954-6092333 FORWARD LENGTH=459 SoyBaseE_val: 3.00E-78ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PTHR24015:SF20Panther SUBFAMILY NOT NAMED JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_B9S7R3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9S7R3_RICCO SoyBaseE_val: 3.00E-75ISS
UniRef100_UPI0002338FB8UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338FB8 related cluster n=1 Tax=unknown RepID=UPI0002338FB8 SoyBaseE_val: 7.00E-118ISS

Expression Patterns of Glyma08g07750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07750
ParalogEvidenceComments
Glyma05g24560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07750 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g072900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g07750
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g07750
>Glyma08g07750.2   sequence type=CDS   gene model=Glyma08g07750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAGGAGCATGATCAAGCAAGGGAGTGTTCCTGATGTTGGAACCTTCAATGCTGTGGTGGAAACGGTTTCTAAAGAGAATGTTCAGTTTTGTGTTGATCTATATCATGAGGTTTGTGCTTTGGGGATGGCTCCTGATGTTAACACTTATAAGATTCTCGTTCCCACTGTTTCGAAGGATGGGATGATTGACGAGGCGTTTAGGTTGTTGAATAATTTCGTCGATGATGGCCACAAGCCCTTTCCCAGCTTGCTTTGTGTAGCAGGGGGCAATTTGATGATGCTTTTTTGCTTCTTTGGGGACATGAAGGCCAAGGCGCATCCTCCTAACCGCCCTCTTTATACTATGCTGATTACCATGTGTGGTCGTGCTGGGAAGTTTGTTGAGGTGGCGAATTATATTTTTGAAATGACAGAGATGGGGTTGGTTCCCATTTCGCGGTGTTTTGACATGGTTACTGATGGGTTGAAGAACTGTGGCAAACATGATTTGGCTGGGAAAGTGCAAGAATGGGAAGTTTCTATACGTGGTGTTTGA
Predicted protein sequences of Glyma08g07750
>Glyma08g07750.2   sequence type=predicted peptide   gene model=Glyma08g07750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRSMIKQGSVPDVGTFNAVVETVSKENVQFCVDLYHEVCALGMAPDVNTYKILVPTVSKDGMIDEAFRLLNNFVDDGHKPFPSLLCVAGGNLMMLFCFFGDMKAKAHPPNRPLYTMLITMCGRAGKFVEVANYIFEMTEMGLVPISRCFDMVTDGLKNCGKHDLAGKVQEWEVSIRGV*






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