Glyma08g07736 - SoyBase

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Report for Sequence Feature Glyma08g07736

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5564725
stop:	5566341
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g07736

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56891	AT	Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein \| chr3:21064199-21064922 REVERSE LENGTH=166	SoyBase	E_val: 8.00E-15	ISS
KOG1603	KOG	Copper chaperone	JGI		ISS
PTHR22814	Panther	COPPER TRANSPORT PROTEIN ATOX1-RELATED	JGI		ISS
PTHR22814:SF15	Panther	COPPER TRANSPORT PROTEIN ATOX1 (METAL TRANSPORT PROTEIN ATX1)	JGI		ISS
PF00403	PFAM	Heavy-metal-associated domain	JGI		ISS
UniRef100_B9R8T1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Copper transport protein atox1, putative n=1 Tax=Ricinus communis RepID=B9R8T1_RICCO	SoyBase	E_val: 6.00E-46	ISS
UniRef100_UPI0002338FB7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338FB7 related cluster n=1 Tax=unknown RepID=UPI0002338FB7	SoyBase	E_val: 5.00E-60	ISS

Expression Patterns of Glyma08g07736

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g07736 not represented in the dataset	Glyma08g07736 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07736

Paralog	Evidence	Comments
Glyma05g24545	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07736 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g072700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g07736

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g07736

Limit To All Plant Sequences

>Glyma08g07736.1   sequence type=CDS   gene model=Glyma08g07736   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTTGTTGAGTTAAAAGTGGAGATGGTTTGCATACATGAGAAAAGACTAAGGAAATGCCTCTCAAAATTAAAAGGGATAGAAAAAGTGGAAGTGGATACTAATTGCCAGAAAGTAGTAGTGACTGGATACACACACAAGAACAAAATCCTAAAAGCAGTTAGGAGAGGGGGTCTCAAAGCTGACTTCTGGTCTGCTCAGAATGAGTTGCTCAATGCTTATGTCAGCTCCAATTATGCCAACTTTAGATTCAACCCCTTCAACTTCTTCTAA

Predicted protein sequences of Glyma08g07736

Limit To All Plant Sequences

>Glyma08g07736.1   sequence type=predicted peptide   gene model=Glyma08g07736   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVVELKVEMVCIHEKRLRKCLSKLKGIEKVEVDTNCQKVVVTGYTHKNKILKAVRRGGLKADFWSAQNELLNAYVSSNYANFRFNPFNFF*

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