Glyma08g07700 - SoyBase

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Report for Sequence Feature Glyma08g07700

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5527415
stop:	5530768
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g07700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64210	AT	Annotation by Michelle Graham. TAIR10: alternative oxidase 2 \| chr5:25683965-25685664 REVERSE LENGTH=353	SoyBase	E_val: 5.00E-160	ISS
GO:0007585	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory gaseous exchange	SoyBase	N/A	ISS
GO:0010230	GO-bp	Annotation by Michelle Graham. GO Biological Process: alternative respiration	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005740	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial envelope	SoyBase	N/A	ISS
GO:0009916	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alternative oxidase activity	SoyBase	N/A	ISS
PF01786	PFAM	Alternative oxidase	JGI		ISS
UniRef100_Q7XZQ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Alternative oxidase n=1 Tax=Glycine max RepID=Q7XZQ0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q7XZQ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alternative oxidase n=1 Tax=Glycine max RepID=Q7XZQ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g07700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07700

Paralog	Evidence	Comments
Glyma05g24455	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g072300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g07700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g07700

Limit To All Plant Sequences

>Glyma08g07700.1   sequence type=CDS   gene model=Glyma08g07700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTCACTGCACTGAATTCTACGGTTCGCCGCGCTCTGCTCAATGGCCGGAACCAAAACGGTAACCGCCTCGGTTCAGCGGCGCTGATGCCGTATGCGGCGGCGGAAACGAGGCTCCTCTGCGCCGGAGGCGCGAACGGATGGTTCTTCTACTGGAAGAGGACGATGGTTTCGCCGGCGGAGGCGAAGCTGCCGGAGAAGGAGAAGGAGAAGGAGAAGGCCAAGGCCGAGAAGAGCGTGGTGGAGTCCAGTTATTGGGGGATTTCGAGGCCGAAGGTTGTGAGAGAGGACGGAACGGAGTGGCCTTGGAACTGCTTCATGCCGTGGGAGAGTTATCGTTCAAACGTGTCCATAGATCTTACTAAGCATCATGTGCCAAAGAATGTTCTGGATAAAGTTGCTTACAGGACAGTGAAGCTCCTGAGAATTCCAACAGATTTGTTTTTTAAGAGACGGTATGGTTGCCGTGCAATGATGCTGGAAACAGTTGCAGCTGTCCCTGGCATGGTAGGAGGGATGCTGTTGCACCTCAGGTCACTCCGTAAGTTTCAGCAAAGTGGTGGTTGGATCAAAGCATTGCTGGAGGAAGCAGAGAATGAGAGAATGCACCTAATGACTATGGTGGAACTTGTGAAGCCTAAATGGTACGAAAGACTGCTGGTTCTTGCTGTACAGGGAGTTTTCTTCAATGCGTTTTTCGTGCTTTACATACTCTCCCCGAAGGTAGCTCATAGAATAGTTGGGTATCTTGAGGAGGAGGCTATACATTCTTACACTGAGTACTTGAAGGATCTTGAAAGTGGTGCAATTGAAAATGTTCCTGCCCCTGCCATTGCAATAGACTATTGGAGGCTTCCCAAGGATGCCAGATTGAAAGATGTTATAACAGTCATTCGTGCTGATGAGGCTCACCATCGAGATGTGAACCATTTTGCTTCTGATATCCACTTTCAAGGTAAAGAACTACGGGAAGCACCGGCTCCTATTGGTTATCACTAG

Predicted protein sequences of Glyma08g07700

Limit To All Plant Sequences

>Glyma08g07700.1   sequence type=predicted peptide   gene model=Glyma08g07700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLTALNSTVRRALLNGRNQNGNRLGSAALMPYAAAETRLLCAGGANGWFFYWKRTMVSPAEAKLPEKEKEKEKAKAEKSVVESSYWGISRPKVVREDGTEWPWNCFMPWESYRSNVSIDLTKHHVPKNVLDKVAYRTVKLLRIPTDLFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENERMHLMTMVELVKPKWYERLLVLAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYTEYLKDLESGAIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQGKELREAPAPIGYH*

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