Glyma08g07670 - SoyBase

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Report for Sequence Feature Glyma08g07670

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5500872
stop:	5504941
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g07670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21790	AT	Annotation by Michelle Graham. TAIR10: tobamovirus multiplication 1 \| chr4:11569924-11572163 FORWARD LENGTH=291	SoyBase	E_val: 2.00E-137	ISS
GO:0006914	GO-bp	Annotation by Michelle Graham. GO Biological Process: autophagy	SoyBase	N/A	ISS
GO:0046786	GO-bp	Annotation by Michelle Graham. GO Biological Process: viral replication complex formation and maintenance	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
PF06454	PFAM	Protein of unknown function (DUF1084)	JGI		ISS
UniRef100_B9SIP7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Virion binding protein, putative n=1 Tax=Ricinus communis RepID=B9SIP7_RICCO	SoyBase	E_val: 3.00E-147	ISS
UniRef100_I1KR24	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KR24_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g07670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07670

Paralog	Evidence	Comments
Glyma05g24420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g072000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g07670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g07670

Limit To All Plant Sequences

>Glyma08g07670.3   sequence type=transcript   gene model=Glyma08g07670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACGACGTCACACGTGTAAGACGGGACACCTACGTGTACGATGTGGGACATAGCCACGTGACATTCCATTAACTTCTTCCCATGTTGACAAAGAGCTTTGGGTTCATAGAAGGAGAGGCTCATGAGTTTGTGGGTGCACTTCAATGGTGGAACCAGATTGATGACTCAGATCAATGGCAGAGAGGCACTTACTATGCCCTTTGTGCCGCTTATACGTTGGTCTCCTTTGTTGCCCTGGTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATTGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGGCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAATGGTTTTATTTACTTGATACAGGTCTGCCTCTGGATTTACATGAGTGTAAGCAAAACTGCAGCTGGTTTGGAAGCTGCAAAACTCCTCCTTGCAGTTATATCATTCTTTGCGGCTCTTGCATTTTTATTGTATGGTGGAAGGTTGTTTTTCTTGTTGAGACGCTTTCCCATAGAATCCAGAGGCCGTCAAAAGAAACTTTACGAGGTTGGATCTGTTACAAGTATTTGTTGCACTTGTTTCCTGATAAGATGTGCTTTGCTTGCACTTTCTGCATTTGATGAGAATTCAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTGTTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTGCCCCCGAGGCGAGTTTCTGATCAGTACCACCCCATTAAATGAGTTGTGCATTTTAAATCCTCTCTGAAGCCAGCAATCTCTCCCTTTTTTGTCCTTTCAATAGATCTGAGTTGGTGCATAACTGTTCTGTATATCCATAATTTCATTTGTTCAACTAATGCCGTTTATTCTCTAAAATACATCTACTTTCTCTCCCTTTTTTGGAGAAAGATGATTTTTGTCTTTCTAAAGCTGAAAAGTAGTATTTTAAACAGCAAATGTCCACCAAACTTTGCACCTCTTCCAACAACACTTAATTTTATTTT

>Glyma08g07670.4   sequence type=transcript   gene model=Glyma08g07670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACGACGTCACACGTGTAAGACGGGACACCTACGTGTACGATGTGGGACATAGCCACGTGACATTCCATTAACTTCTTCCCATGACAAAGAGCTTTGGGTTCATAGAAGGAGAGGCTCATGAGTTTGTGGGTGCACTTCAATGGTGGAACCAGATTGATGACTCAGATCAATGGCAGAGAGGCACTTACTATGCCCTTTGTGCCGCTTATACGTTGGTCTCCTTTGTTGCCCTGGTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATTGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGGCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAATGGTTTTATTTACTTGATACAGGTCTGCCTCTGGATTTACATGAGTGTAAGCAAAACTGCAGCTGGTTTGGAAGCTGCAAAACTCCTCCTTGCAGTTATATCATTCTTTGCGGCTCTTGCATTTTTATTGTATGGTGGAAGGTTGTTTTTCTTGTTGAGACGCTTTCCCATAGAATCCAGAGGCCGTCAAAAGAAACTTTACGAGGTTGGATCTGTTACAAGTATTTGTTGCACTTGTTTCCTGATAAGATGTGCTTTGCTTGCACTTTCTGCATTTGATGAGAATTCAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTGTTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTGCCCCCGAGGCGAGTTTCTGATCAGTACCACCCCATTAAATGAGTTGTGCATTTTAAATCCTCTCTGAAGCCAGCAATCTCTCCCTTTTTTGTCCTTTCAATAGATCTGAGTTGGTGCATAACTGTTCTGTATATCCATAATTTCATTTGTTCAACTAATGCCGTTTATTCTCTAAAATACATCTACTTTCTCTCCCTTTTTTGGAGAAAGATGATTTTTGTCTTTCTAAAGCTGAAAAGTAGTATTTTAAACAGCAAATGTCCACCAAACTTTGCACCTCTTCCAACAACACTTAATTTTATTTT

Coding sequences of Glyma08g07670

Limit To All Plant Sequences

>Glyma08g07670.1   sequence type=CDS   gene model=Glyma08g07670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTTGGACTCAGGACAAAGAGCTTTGGGTTCATAGAAGGAGAGGCTCATGAGTTTGTGGGTGCACTTCAATGGTGGAACCAGATTGATGACTCAGATCAATGGCAGAGAGGCACTTACTATGCCCTTTGTGCCGCTTATACGTTGGTCTCCTTTGTTGCCCTGGTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATTGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGGCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAATGGTTTTATTTACTTGATACAGGTCTGCCTCTGGATTTACATGAGTGTAAGCAAAACTGCAGCTGGTTTGGAAGCTGCAAAACTCCTCCTTGCAGTTATATCATTCTTTGCGGCTCTTGCATTTTTATTGTATGGTGGAAGGTTGTTTTTCTTGTTGAGACGCTTTCCCATAGAATCCAGAGGCCGTCAAAAGAAACTTTACGAGGTTGGATCTGTTACAAGTATTTGTTGCACTTGTTTCCTGATAAGATGTGCTTTGCTTGCACTTTCTGCATTTGATGAGAATTCAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTGTTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTGCCCCCGAGGCGAGTTTCTGATCAGTACCACCCCATTAAATGA

>Glyma08g07670.3   sequence type=CDS   gene model=Glyma08g07670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGACAAAGAGCTTTGGGTTCATAGAAGGAGAGGCTCATGAGTTTGTGGGTGCACTTCAATGGTGGAACCAGATTGATGACTCAGATCAATGGCAGAGAGGCACTTACTATGCCCTTTGTGCCGCTTATACGTTGGTCTCCTTTGTTGCCCTGGTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATTGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGGCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAATGGTTTTATTTACTTGATACAGGTCTGCCTCTGGATTTACATGAGTGTAAGCAAAACTGCAGCTGGTTTGGAAGCTGCAAAACTCCTCCTTGCAGTTATATCATTCTTTGCGGCTCTTGCATTTTTATTGTATGGTGGAAGGTTGTTTTTCTTGTTGAGACGCTTTCCCATAGAATCCAGAGGCCGTCAAAAGAAACTTTACGAGGTTGGATCTGTTACAAGTATTTGTTGCACTTGTTTCCTGATAAGATGTGCTTTGCTTGCACTTTCTGCATTTGATGAGAATTCAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTGTTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTGCCCCCGAGGCGAGTTTCTGATCAGTACCACCCCATTAAATGA

>Glyma08g07670.4   sequence type=CDS   gene model=Glyma08g07670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAAGAGCTTTGGGTTCATAGAAGGAGAGGCTCATGAGTTTGTGGGTGCACTTCAATGGTGGAACCAGATTGATGACTCAGATCAATGGCAGAGAGGCACTTACTATGCCCTTTGTGCCGCTTATACGTTGGTCTCCTTTGTTGCCCTGGTGCAACTGGTACGAATTCAAAGGAGGGTACCTGAGTATGGGTGGACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATTGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGGCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAATGGTTTTATTTACTTGATACAGGTCTGCCTCTGGATTTACATGAGTGTAAGCAAAACTGCAGCTGGTTTGGAAGCTGCAAAACTCCTCCTTGCAGTTATATCATTCTTTGCGGCTCTTGCATTTTTATTGTATGGTGGAAGGTTGTTTTTCTTGTTGAGACGCTTTCCCATAGAATCCAGAGGCCGTCAAAAGAAACTTTACGAGGTTGGATCTGTTACAAGTATTTGTTGCACTTGTTTCCTGATAAGATGTGCTTTGCTTGCACTTTCTGCATTTGATGAGAATTCAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTGTTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTGCCCCCGAGGCGAGTTTCTGATCAGTACCACCCCATTAAATGA

Predicted protein sequences of Glyma08g07670

Limit To All Plant Sequences

>Glyma08g07670.1   sequence type=predicted peptide   gene model=Glyma08g07670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFGLRTKSFGFIEGEAHEFVGALQWWNQIDDSDQWQRGTYYALCAAYTLVSFVALVQLVRIQRRVPEYGWTTQKVFHLMNFVVNGLRAVLFGFYRSVFAIRPKALEQVLMEVPGLLFFSTYTLLVLFWAEIYHQARSEPAQKLRPSYFIINGFIYLIQVCLWIYMSVSKTAAGLEAAKLLLAVISFFAALAFLLYGGRLFFLLRRFPIESRGRQKKLYEVGSVTSICCTCFLIRCALLALSAFDENSDLDVLDHPILNLMYYLLVEIVPSALVLFILRKLPPRRVSDQYHPIK*

>Glyma08g07670.3   sequence type=predicted peptide   gene model=Glyma08g07670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLTKSFGFIEGEAHEFVGALQWWNQIDDSDQWQRGTYYALCAAYTLVSFVALVQLVRIQRRVPEYGWTTQKVFHLMNFVVNGLRAVLFGFYRSVFAIRPKALEQVLMEVPGLLFFSTYTLLVLFWAEIYHQARSEPAQKLRPSYFIINGFIYLIQVCLWIYMSVSKTAAGLEAAKLLLAVISFFAALAFLLYGGRLFFLLRRFPIESRGRQKKLYEVGSVTSICCTCFLIRCALLALSAFDENSDLDVLDHPILNLMYYLLVEIVPSALVLFILRKLPPRRVSDQYHPIK*

>Glyma08g07670.4   sequence type=predicted peptide   gene model=Glyma08g07670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKSFGFIEGEAHEFVGALQWWNQIDDSDQWQRGTYYALCAAYTLVSFVALVQLVRIQRRVPEYGWTTQKVFHLMNFVVNGLRAVLFGFYRSVFAIRPKALEQVLMEVPGLLFFSTYTLLVLFWAEIYHQARSEPAQKLRPSYFIINGFIYLIQVCLWIYMSVSKTAAGLEAAKLLLAVISFFAALAFLLYGGRLFFLLRRFPIESRGRQKKLYEVGSVTSICCTCFLIRCALLALSAFDENSDLDVLDHPILNLMYYLLVEIVPSALVLFILRKLPPRRVSDQYHPIK*

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