SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G17840 | AT | Annotation by Michelle Graham. TAIR10: white-brown complex homolog protein 11 | chr1:6142870-6145894 FORWARD LENGTH=703 | SoyBase | E_val: 9.00E-65 | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0015908 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid transport | SoyBase | N/A | ISS |
| GO:0080051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cutin transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009897 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: external side of plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0015245 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: fatty acid transporter activity | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| GO:0042626 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances | SoyBase | N/A | ISS |
| PTHR19241 | Panther | ATP-BINDING CASSETTE TRANSPORTER | JGI | ISS | |
| PTHR19241:SF20 | Panther | ABC TRANSPORTER | JGI | ISS | |
| PF01061 | PFAM | ABC-2 type transporter | JGI | ISS | |
| UniRef100_G7JCQ7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: White-brown-complex ABC transporter family n=1 Tax=Medicago truncatula RepID=G7JCQ7_MEDTR | SoyBase | E_val: 9.00E-125 | ISS |
| UniRef100_I1KR14 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KR14_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g07561 not represented in the dataset |
Glyma08g07561 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g07561.1 sequence type=CDS gene model=Glyma08g07561 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTCGTGATCTAGGCTATTACTTGTTACGCCTTGCCATATTTGTTGCATTGGCAATAGCTTTGGCCACTATTTTCTATGATTTGGGTACAAGTTACGTCTCAATTCAGGTACGAAGGAAAGTTTACGACAATGCCATCAATTTTCATTTTTGTGGCGGTTTTGGCCAAATGGAATTAAGATTAACTTACAATAGGAAAAAAAAAATATCAAAGGTATTTCAACGAGAAAGGCAAAATGGGCATTATGGTGTCACTGCATTCGTCATTGGGAACACCTTGTCGTCGATTCCATACTTGTTATTGATTACAATTATTCCTGGGGCTATAGCTTATTACCTTCCTGGTCTTCATAATGGATGCGAGCACTTTCTGTATTTCATTTGTGTTTTATTTTCTAGTCTCATGTTAGTGGAGAGTCTTATGATGATAGTTGCGAGCGTTGTTCCCAACTTTCTAATGGGTATCATGACTGGTGCTGGAATTCTAGGAATCATGCTTTTACTTGGCGGGTTCTTTAAATTGCCACATGATATTCCTATCCCGGTTTGGAGATACCCATTACACTTTGTTGCTTTTCACACGTTTGCCAACCGTGGAATGTTCAAGAACGAGTACGAAGGACTAAGATTTGCTTCCAATGAAGTTGGAGGAGGTTACATAAGCGGTGAAGAGGTTTTGAGATATGCATGGCAAGTTGACATGAGTTACTCAAAGTGGGTTGATCTTGCAATCTTGATAGGGATGATTTTTCTTTATCGAGTTTTGTTTTTGGTTATCATCAAGGTTAAAGAGAAGGTGAGGCCCGTTGTTGTATCATTATCATGTATGTCAGCGTCTTCCAAGCGAACAATACAAGTCATGGAAAATCCCAACGCCACTCCTTTACATTGA
>Glyma08g07561.1 sequence type=predicted peptide gene model=Glyma08g07561 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRRDLGYYLLRLAIFVALAIALATIFYDLGTSYVSIQVRRKVYDNAINFHFCGGFGQMELRLTYNRKKKISKVFQRERQNGHYGVTAFVIGNTLSSIPYLLLITIIPGAIAYYLPGLHNGCEHFLYFICVLFSSLMLVESLMMIVASVVPNFLMGIMTGAGILGIMLLLGGFFKLPHDIPIPVWRYPLHFVAFHTFANRGMFKNEYEGLRFASNEVGGGYISGEEVLRYAWQVDMSYSKWVDLAILIGMIFLYRVLFLVIIKVKEKVRPVVVSLSCMSASSKRTIQVMENPNATPLH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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