Glyma08g07510 - SoyBase

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Report for Sequence Feature Glyma08g07510

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5354604
stop:	5366311
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g07510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65290	AT	Annotation by Michelle Graham. TAIR10: LMBR1-like membrane protein \| chr5:26089814-26094337 FORWARD LENGTH=733	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2296	KOG	Integral membrane protein	JGI		ISS
PTHR21355	Panther	UNCHARACTERIZED	JGI		ISS
PF04791	PFAM	LMBR1-like membrane protein	JGI		ISS
UniRef100_G7JCR3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LMBR1 domain-containing protein-like protein n=1 Tax=Medicago truncatula RepID=G7JCR3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KR08	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KR08_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g07510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07510

Paralog	Evidence	Comments
Glyma13g08020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g070500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g07510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g07510

Limit To All Plant Sequences

>Glyma08g07510.1   sequence type=CDS   gene model=Glyma08g07510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAACGTGGAAACAGTTAATTGTACCAGCAAGTCACTAAATGATGATGAAAATGAAGCAATTTCCTTCTTGTGGAGTTTGACATATTGGAGTACCTTCTTACTTACATGGGCTGTGGTTCCCACTATTCAGGGTTATGAAGATGCTGGAGACTTCACAGTGAAAGCAAGATTGAGGACCAGCTTACATGGAAACCTTGTTTTCTATCTGTGTCTCGGTTCTGTAGCACTCTTTGGATTGATATTACTAATTTCTTTGCACAAAAATTATTGGAGTGGTAATGTTACCGGTTTTGCCATGGCTTGCTCTAATACATTTGGACTGGTTACCGGTGCATTTCTACTTGGATTTGGTTTGAGTGAAATTCCAAAAGGCATTTGGTTAAGTGCAGATTGGAACATTGAGCAAAAAGTTCTTTCACATAAAGTTGCAAAAATGGCTGTCAAATTAGATGATGCTCATCATGATTTTTCAAATGCTATTGTTATCACCCAGGCAACATCGAAGCAAATGTCCAAGCGGGATTCTTTGAGACCCTACATGAATATAATTGACAAAATGTTGCTTCAGATGTTGAAGGAAGACCCCTCCTTCAAACCACAGGGTGGAAGACTAGGAGAAAGTGACATGGATTATGATACAGATGATAAATCTATGGCAGCACTAAGACGTCGTCTTAAGAGAGCTCGTGAACAGTACTATCGATATAGAAGTGAATATACAAAATTTGTCGTAGAAGCCCTTGAGCTGGAGGATACCATAAAGAATTATGACCGACGTGATGCTACAGGATGGAAATATTTTTCATGCTTGAGGCCTGAACGCATAGGCAAAGTAGGTGCACTTTTGGATACAATAGAGTTTCTATGGCGATGTATATTATGGAAACAGCTTGAGAAATCATTGGCTGTTATATTGGGCTGCATGTCATTTGCAATTCTATTAGCAGAGGCTACCATACTCACCAGTGGAGTTGATTTATCCCTTTTCTCTATCCTAGTACATGCTGGAGGGCAGCAAGAGGTGCTTGTACAGTTGGCTGCTTTCATCCCCTTAATGTATATGTGTATCTGTACATATTATTCCTTGTTTAAAATGGGAATGATGATGTTTTACTCACTGACACCAAAACAAACAAGCTCAGTAAGCCTGCTTATGATATGCTCGATGATTGCAAGATATGCAGCACCCATTTCATACAACTTTCTCAATCTCATTAATCTTGGTGGGGGTAGAAAAACAATTTTTGAACAAAAAATGGGAAAGATCAATGACGCTGTTCCCTTTTTTGGAAAAGGATTCAACAAAATTTACCCCCTCATCATGGTTGTATACACTTCACTAATAGCAAGCAATATTTTTAACCGGGTCATCAAGTATTGTGGGAATTGGAAAATATTCAAGTTCAATGATGATGCAGAAGATATGGATGGATTTGACCCATCCGGAGTAATAATATTGCAGAGAGAACGTTCTCTTCTCCAACAAGGGCACAAAGTTGGTGAACTTGTTTTTCCTTTGGCAAGGAGTTTCAGTGTGACTATGGATGTCGAGTCCAACAGCAAGGCCATGGCTCTGAATGAGAGTGCCACTACCAACATAGTGGAAGAGAAAAATGAAGGCACTCAGAAAGACATGAGCAGAAAAATTGGCAGCAAAAAGTATGCAGCCTTAAGGACAAACTTCAATGAAGAGGTGTCTAGTAAAGATTTGACCCAGGAAAGAGTTTCTTCCTCCTTGACAAGTGATGCTAATGATTCTCAGAACACAAGTTCAGCTCCATCATCTGCATTGGCCTCAAAATGGGAATCAATGATGCATGGATTTAAAAGTTTGAGATCTAACATTGACTCCAAGGGATTCCTCCCTCTTTCTAATGCTCAAGGGTCAACTCTAAACTCAAAATCTTCATCTGAATCCCTTGATGACATATTTGAGAGATTGAAACGTCCTCCTTCAGAATATAGAGATTCTGGTGACTGA

Predicted protein sequences of Glyma08g07510

Limit To All Plant Sequences

>Glyma08g07510.1   sequence type=predicted peptide   gene model=Glyma08g07510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQNVETVNCTSKSLNDDENEAISFLWSLTYWSTFLLTWAVVPTIQGYEDAGDFTVKARLRTSLHGNLVFYLCLGSVALFGLILLISLHKNYWSGNVTGFAMACSNTFGLVTGAFLLGFGLSEIPKGIWLSADWNIEQKVLSHKVAKMAVKLDDAHHDFSNAIVITQATSKQMSKRDSLRPYMNIIDKMLLQMLKEDPSFKPQGGRLGESDMDYDTDDKSMAALRRRLKRAREQYYRYRSEYTKFVVEALELEDTIKNYDRRDATGWKYFSCLRPERIGKVGALLDTIEFLWRCILWKQLEKSLAVILGCMSFAILLAEATILTSGVDLSLFSILVHAGGQQEVLVQLAAFIPLMYMCICTYYSLFKMGMMMFYSLTPKQTSSVSLLMICSMIARYAAPISYNFLNLINLGGGRKTIFEQKMGKINDAVPFFGKGFNKIYPLIMVVYTSLIASNIFNRVIKYCGNWKIFKFNDDAEDMDGFDPSGVIILQRERSLLQQGHKVGELVFPLARSFSVTMDVESNSKAMALNESATTNIVEEKNEGTQKDMSRKIGSKKYAALRTNFNEEVSSKDLTQERVSSSLTSDANDSQNTSSAPSSALASKWESMMHGFKSLRSNIDSKGFLPLSNAQGSTLNSKSSSESLDDIFERLKRPPSEYRDSGD*

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