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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G64300 | AT | Annotation by Michelle Graham. TAIR10: GTP cyclohydrolase II | chr5:25718459-25720790 FORWARD LENGTH=543 | SoyBase | E_val: 0 | ISS |
| GO:0009231 | GO-bp | Annotation by Michelle Graham. GO Biological Process: riboflavin biosynthetic process | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003935 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP cyclohydrolase II activity | SoyBase | N/A | ISS |
| GO:0008686 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | SoyBase | N/A | ISS |
| KOG1284 | KOG | Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase | JGI | ISS | |
| PTHR21327 | Panther | GTP CYCLOHYDROLASE II-RELATED | JGI | ISS | |
| PF00925 | PFAM | GTP cyclohydrolase II | JGI | ISS | |
| PF00926 | PFAM | 3,4-dihydroxy-2-butanone 4-phosphate synthase | JGI | ISS | |
| UniRef100_G7JCR5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GTP cyclohydrolase II/3 4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Medicago truncatula RepID=G7JCR5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233AE17 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233AE17 related cluster n=1 Tax=unknown RepID=UPI000233AE17 | SoyBase | E_val: 0 | ISS |
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Glyma08g07501 not represented in the dataset |
Glyma08g07501 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g08035 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g070400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g07501.1 sequence type=CDS gene model=Glyma08g07501 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTTCTCTCAGTCTCTCCACTCCTCCTCTCTATCGCCCTAGAGTATGCAAACATTTCAAATTGTTCAATGGGTTACATAAGTTCTCATTCAATGGATATGGGTTGGATTTGGCCGTTGTCCTACAAAACTCTAATGCTGCTGGCAGAATTAGAGCTACATTAACATTTGGAGGAGGAGACTTAGGATCTTATCTGAAGAGTTCTGATGTTGTGACCAATCGTTTCGGAACTGGGACACAGTTTGATGCGGTAGCGTTTGGAACGCTGGGAGCAGACACAGCAGTGCCAGCAGGCAGTGGTTTTTCTGATGATGAATCCGAGCATGATTTCGATAGTCCCACGGAAGGTTTTGCTTCCATACCGGAGGCCATCGAAGACATTAGGAATGGAAAGATGGTAGTGGTTGTAGATGACGAGGACAGGGAAAATGAAGGAGACTTGATAATGGCGGCACAGTTGGCTACACCTGAGGCTATGGCTTTTATTGTGAAGCATGGAACTGGGATAGTTTGTATAAGCATGAAGGAGGAAGATTTAGAGAGATTGGAGCTGCCTTTGATGGTGAACAGTCAGTATAACGATGAGAAACTTCGCACCGCGTTCACTGTGACAGTGGATGCTAAATATGGTACTACCACAGGGGTGTCAGCTCATGATAGGGCAACAACAGTCTTGGCCCTTGCATCCAAAGATTCACAACCAAGTGATTTCAACCGCCCAGGCCATATCTTCCCACTAAAATACAAGGAGGGTGGTGTGCTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTTGCCATTCTTGCTGGTTTAAATCCTGTGGCAGTTCTGTGTGAGATTGTAGATGATGATGGTTCCATGGCTAGATTACCTAAGCTTCGCCAGTTTGCAGAGCGTGAAAATTTAAAAATTGTATCTATTGCTGACTTAATAAGGTATAGAAGGAAGAGAGATAAACTAATAGAGCGTGCTGGTGCTGCACTAATACCAACAATGTGGGGGCCATTTGTAGCTAACTGCTATAGGTCACTTTTAGATGGGATTGAGCATATTGCTATGGTTAAGGGTGACATTGGGGATGGACATGATGTTCTTGTAAGGGTACACTCAGAGTGTCTCACGGGAGACATATTTGGCTCTGCCAGATGTGACTGTGGAAATCAGCTTGCTCTTGCAATGCAACAGATTGAAGCTGCTGGTAGAGGTGTTTTGGTTTATCTTCGTGGACATGAAGGAAGGGGTATTGGCTTGGGCCACAAACTACGAGCTTATAACCTACAGGATGATGGACGGGACACCGTTGAAGCCAATGAGGAGTTGGGATTGCCTGTCGACTCAAGGGAATATGGAATTGGTGCACAGATTTTGAGGGACTTGGGTGTTCGATCTATGAAGCTAATGACGAACAATCCAGCAAAATATGTTGGGCTCAAAGGTTATGGTTTGACAATTTCCGGTAGGATCCCATTGGTATCACTTATCACAAAAGAGAACAAGCGATACTTGGAGACCAAACGTGTGAAAATGGGTCACGTATATGGCTCGGAATTTAACAGCAAATTGAACTATCAAGACAGTGGCAATGGTAAAGTCAATAGTGATGATGATTCTAATGCTGCTCCTGGCTTATAA
>Glyma08g07501.1 sequence type=predicted peptide gene model=Glyma08g07501 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSLSLSTPPLYRPRVCKHFKLFNGLHKFSFNGYGLDLAVVLQNSNAAGRIRATLTFGGGDLGSYLKSSDVVTNRFGTGTQFDAVAFGTLGADTAVPAGSGFSDDESEHDFDSPTEGFASIPEAIEDIRNGKMVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCISMKEEDLERLELPLMVNSQYNDEKLRTAFTVTVDAKYGTTTGVSAHDRATTVLALASKDSQPSDFNRPGHIFPLKYKEGGVLKRAGHTEASVDLAILAGLNPVAVLCEIVDDDGSMARLPKLRQFAERENLKIVSIADLIRYRRKRDKLIERAGAALIPTMWGPFVANCYRSLLDGIEHIAMVKGDIGDGHDVLVRVHSECLTGDIFGSARCDCGNQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQILRDLGVRSMKLMTNNPAKYVGLKGYGLTISGRIPLVSLITKENKRYLETKRVKMGHVYGSEFNSKLNYQDSGNGKVNSDDDSNAAPGL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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