SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G14095 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 106 Blast hits to 103 proteins in 21 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 4; Plants - 87; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr2:5932506-5933752 REVERSE LENGTH=234 | SoyBase | E_val: 7.00E-38 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1KR05 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KR05_SOYBN | SoyBase | E_val: 5.00E-153 | ISS |
| UniRef100_Q8S8A5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q8S8A5_ARATH | SoyBase | E_val: 4.00E-35 | ISS |
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Glyma08g07480 not represented in the dataset |
Glyma08g07480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g08060 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g070200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g07480.1 sequence type=CDS gene model=Glyma08g07480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAAATAGAGGCTCATCATGGATAACTCTGAAATTCAGAGGTGTTGTTGATGTAATTCGTGCCAGCAGATATCAATCAAACTATGTTGCACTACAGAGAAACAGACCAATTGTGTCAGCTGCTAGAACTGAAAGAGGTTATTGGATGCACCCTGGTCAGCAATTCTATAGCACCAATAGCATCAACCCAAGCACTAATCCAAAAGGAATAAAGGATGTGAAGCCTCAAGCTGAAGCTCTTGCACCTGCTTCTAAAATCCTCACCTTCTCTCATTGGCTAAGATGGGTTTTGGGCATGGTACTTTCTCTCTTGCTACCTTTCTGGAAACCTTACTGGAAAAAATTACAGATAGTAGAAGTGGAGGCAGAGTTTGTGGTTGAAGAGGCTGAAGCGGTGGCAAAAATGGTAGAAAAAGTGGCAATGGTAACAGAAAAGGTATCTGAAGATGTAGCAGAGATGCTTCCTGAGGATGGTAAATTAAGGAAAGCAGCTTTGGTGGTAGAACGTGCATCAAAAGAGGCAGCACATGATGCTCAGTTAACTGAAGAATTCTTACACAAGGTTGAAGAACTCAAGAATGACCTGGATGATTTAGAAGCCTTTGTTGAACCGGTAATTGACAAGATTGTGAAGATGTAA
>Glyma08g07480.1 sequence type=predicted peptide gene model=Glyma08g07480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNRGSSWITLKFRGVVDVIRASRYQSNYVALQRNRPIVSAARTERGYWMHPGQQFYSTNSINPSTNPKGIKDVKPQAEALAPASKILTFSHWLRWVLGMVLSLLLPFWKPYWKKLQIVEVEAEFVVEEAEAVAKMVEKVAMVTEKVSEDVAEMLPEDGKLRKAALVVERASKEAAHDAQLTEEFLHKVEELKNDLDDLEAFVEPVIDKIVKM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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