Glyma08g07470 - SoyBase

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Report for Sequence Feature Glyma08g07470

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5334960
stop:	5336036
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g07470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72220	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr1:27184388-27185629 REVERSE LENGTH=413	SoyBase	E_val: 1.00E-46	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1493	KOG	Anaphase-promoting complex (APC), subunit 11	JGI		ISS
PTHR22765	Panther	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	JGI		ISS
PTHR22765:SF25	Panther		JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7JV62	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING-H2 finger protein ATL1O n=1 Tax=Medicago truncatula RepID=G7JV62_MEDTR	SoyBase	E_val: 8.00E-104	ISS
UniRef100_I1KR04	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KR04_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g07470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07470

Paralog	Evidence	Comments
Glyma13g08070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g070100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g07470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g07470

Limit To All Plant Sequences

>Glyma08g07470.1   sequence type=CDS   gene model=Glyma08g07470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCTGAACTACAGAAATTTGTTCCCAGGAACACCATCAAACTGTCTACAAGACTGTTCTTATGATGATAAATCATCATGTTGTGATCCTTCTAATTTGCTCCCTCCAACTCCTCCTATCTACTCAGATAATGATTTGAGCCAAAGTCCCAGCAAACACATCAAAGCTGAATACTTGATCATAAGTTTCTCCATTGTAGCAACCGCTTTCATTGCCCTCTTCTGCTACGCCATCTACGTCAAGTTCTTCTCCCCTCGGAACACCTCAATTATCAGAAGAAGAAGAACAACAACAACAACAACCTTGTCACAGCCACAAACAGAACAATATTTCTTGGACGAGGAAGAACATGGTCCTGTCGTTGACCATCCCATCTGGTACATCCGCACCACCGGTCTCCAACAAGCAGTCATCACCGCCATCACCGTCTGCAATTACAAAAAAGACGAAGGCTTGATCGAAGGTACAGAATGTTCAGTTTGCCTCAGCGAGTTTCAAGAGGACGAAAGTCTCAGGCTTTTACCAAAGTGTAACCACGCTTTTCACTTACCTTGCATTGACACGTGGCTTAGATCGCACACCAATTGCCCCATGTGTCGTGCTCCTATTGTCACTGACCCAACAAGGGTTCCTTCTTCCATGGACCCTACTGCGTTTGAAACAAGTTCTTTTGTGGAGGAGATTTTTGAAAATAGTGCGGAGAATACTCAAAATAGTAGTGATGATTTGTTGAGGGGTGAGGAAGAGGAAAGAGTGCAAGAAGATGAAGCGTGTGAAGAGAACTTGGCTTCTGAACTTGTGGTGACTGTGCAGCAGCCGAGAAGATCGGTGTCTCTGGATTCTTCTTCTGCTGCTAAGATCAGTCTTGCTCTTGCTACTGTTGTGTCAGGGGAATCTCACGGGGATCATTCAAAGAGGGTTGGTGGGAATGGGAATTTGGCTACTAAAGGTGGTTCTAGTTCTTGTTCTTCGACTAGTTCAGTGAAAAGGTCGCTATCATTCAATGCCAAACACTTGCTATCATGGTATAGCCGAAGTCAGAGAAAGCCAAATGCTCCTTTGAGAAGCTTCTGA

Predicted protein sequences of Glyma08g07470

Limit To All Plant Sequences

>Glyma08g07470.1   sequence type=predicted peptide   gene model=Glyma08g07470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLNYRNLFPGTPSNCLQDCSYDDKSSCCDPSNLLPPTPPIYSDNDLSQSPSKHIKAEYLIISFSIVATAFIALFCYAIYVKFFSPRNTSIIRRRRTTTTTTLSQPQTEQYFLDEEEHGPVVDHPIWYIRTTGLQQAVITAITVCNYKKDEGLIEGTECSVCLSEFQEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTDPTRVPSSMDPTAFETSSFVEEIFENSAENTQNSSDDLLRGEEEERVQEDEACEENLASELVVTVQQPRRSVSLDSSSAAKISLALATVVSGESHGDHSKRVGGNGNLATKGGSSSCSSTSSVKRSLSFNAKHLLSWYSRSQRKPNAPLRSF*

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