SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G37830 | AT | Annotation by Michelle Graham. TAIR10: oxoprolinase 1 | chr5:15056635-15060525 REVERSE LENGTH=1266 | SoyBase | E_val: 0 | ISS |
| GO:0006751 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glutathione catabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| GO:0017168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 5-oxoprolinase (ATP-hydrolyzing) activity | SoyBase | N/A | ISS |
| KOG1939 | KOG | Oxoprolinase | JGI | ISS | |
| PTHR11365 | Panther | 5-OXOPROLINASE RELATED | JGI | ISS | |
| PF01968 | PFAM | Hydantoinase/oxoprolinase | JGI | ISS | |
| PF02538 | PFAM | Hydantoinase B/oxoprolinase | JGI | ISS | |
| PF05378 | PFAM | Hydantoinase/oxoprolinase N-terminal region | JGI | ISS | |
| UniRef100_B9SP24 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 5-oxoprolinase, putative n=1 Tax=Ricinus communis RepID=B9SP24_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_G7JV66 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G7JV66_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma08g07400 not represented in the dataset |
Glyma08g07400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g069400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g07400.1 sequence type=CDS gene model=Glyma08g07400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAGCGTTACTGAAGGGAAGTTGAGGTTTTGTATTGATAGAGGGGGCACGTTTACTGATGTGTATGCAGAAATCCCTGGTCAGACTGATGGGCAAGTTTTGAAGCTTCTGTCGGTTGACCCTTTGAACTATGATGATGCACCGGTGGAAGGGATACGGAGGATTCTTGAAGAATTCACTGGTGAGAAAATTCCACGCAACTCAAAGATACCCACTGAGAAGATTGAGTGGATAAGGATGGGTACAACTGTGGCAACGAATGCACTTTTAGAGCGCAAGGGAGAAAGGATTGCAGTGTGTGTGACTCGAGGCTTTCGTGATTTACTCCAGATAGGGAACCAGGCTCGCCCCAGCATATTTGACCTTACTGTGTTGAAGCCATCAAATCTCTATGAAGAAGTTGTGGAGGTTGAAGAGAGAGTTCAACTTGTTCAGTCTGAGGAAGAAGAAGAAAAGCAGGGTGGTTCTTCATCTGTGGTTAAGGGAATTTCAGGGGAGCTTGTCAGGATTGTGAAGCCTCTTAATGAAGAAGCACTGAAGCCAGTACTGAAAAACTTATTGGACAAAGGAATTAGTTGTTTGGCTGTTGTTTTGATGCACTCATACACTTATCCACAACATGAACAACAGGTCAAGAAGTTAGCTTTGAGTCTGGGATTCAGACATGTTTCCATATCATCTGCTTTGAGTCCCATGGTCCGTGCTGTTCCTCGTGGTCTAACAGCTGGTGTAGATGCTTATCTGACCCCAGTTATTAAAGAATACCTATCAGGATTCATCTCCAAATTTGATGAGGGAATTGGAAAGTTGAATGTTTTGTTTATGCAATCAGATGGAGGACTTGCACCTGAGAGTACCTTCTCAGGGCACAAAGCAATTTTATCTGGTCCTGCTGGTGGAGTTGTTGGTTACTCACAAACTCTTTTTGGGCTTGAAACAGATAAGCCACTAATTGGGTTTGATATGGGGGGAACATCTACAGATGTGAGTCGGTATGCAGGTAGTTATGAGCAAGTGCTGGAAACCCAGATTGCCGGTGCCATAATTCAAGCACCTCAGCTTGACATAAACACTGTAGCTGCTGGTGGTGGTTCAAAGTTGAAGTTCCAATTTGGTACTTTTCAAGCTGGACCAGAATCAGTTGGAGCACACCCTGGTCCCGTATGTTACCGAAAAGGTGGAGAGTTGGCAATTACTGATGCTAACCTAGTTCTGGGATATGTTATTCCTGATTATTTCCCTTCTATATTTGGTCCAAATGAAGATCAGCCTCTTGATTTCAAGTCAACTAGAGGAGAATTTGAGAAGCTTGCCAGGCAAATAAATACTCACCGAAGGAATCAGGATCCATCTTCAAAAGACATGACAGTGGAAGAGATTGCACTTGGCTTTGTGGATGTTGCTAATGAGACAATGTGTCGTCCTATAAGACAGTTGACTGAAATGAAGGGCCATGAGACAAAGAACCATTCACTTGCTTGCTTTGGTGGTGCTGGACCTCAGCATGCTTGTGCTATAGCTAGGTCGTTAGGTATGAAAGAAGTGCTCATTCACAGATTTTGTGGGATCTTAAGTGCATATGGAATGGGGTTGGCAAATGTTGTGGAAGAGGCACAGGAACCTTATTCTGCAGTGTATGGAGTTGAATCTATTGTTGAGGTCTCACAACGAGAAGCTGTTTTACTTAGACAGGTAAAGCAGAAATTGCAAATTCAAGGATTTAAGGAGGAAAATATTTCAACAGAGACATATTTAAACTTGAGATATGAAGGTACAGACACTGCCATCATGGTCAAAAGACAAGTAGCTGAAGATGGAAATTTATGTGACTATGCTACTGAGTTTGTGAGATTGTTTCAACAGGAATACGGCTTTAAACTCCAGAATAGGAATATTGTTATCTGTGATGTTAGAGTTCGTGGTATAGGAGTCACCAATATATTGAGGCCACAGGCCATAGAACCTGCCCCTGGCAGTCCTATAGTTGAAGGCTACTATAAGGTTTACTTTGGGAATGGTTGGCAGGAAACACCTCTCTATAAGCTTGAAAAGCTGGGCTATGGTCATATGATGTCTGGGCCAGCAATCATCATGAATGGCAATAGCACTGTGATTGTAGAACCCAACTGTAGAGCCATTATAACCAAATACGGAAACATCAAGATTGAAATAGAGTCCCCTTTAACCAGTGTTAAAATATCAGATAAAGTTGCAGATGTTGTACAGCTCTCCATCTTCAATCACAGATTTATGGGTATAGCTGAGCAGATGGGAAGGACACTACAAAGAACTTCCATTTCAACAAATATCAAAGAACGGCTTGATTTTTCCTGTGCTCTATTTGATCCTAGTGGGGGCCTAGTTGCAAATGCACCTCATGTTCCTGTCCATCTAGGAGCTATGTCTAGTACAGTTCAGTGGCAGCTCAATTACTGGGGTGACAATTTAAATGAAGGAGATGTTTTGGTTACTAATCATCCATCTGCTGGAGGTAGCCATCTTCCTGATATAACTGTTATTACACCTGTTTTCTTCAATGGGAAGTTGGTTTTTTTTGTGGCAAATAGAGGGCATCATGCAGAGATCGGGGGTACTACCCCTGGAAGCATGCCGCCTTTTTCAAAATCCATATTGGAGGAAGGAGCTGCCATTAAGGCATTTAAGCTTGTTGAAAAAGGTATCTTTCAAGAAGAGGGGATCATTAAACTTCTGCAGTTCCCAAGCTCTGATGGTCGAGGAAATAAGATAGCAGGAACTCGCAGGATTCAAGATAACTTGTCAGATCTGCGAGCGCAAGTAGCAGCAAATCAAAGAGGAATTTCTCTAGTTCTAGAGCTCATTGAGCAGTATGGTCTTGAAACAGTTCAGGCTTACATGAATTATGTACAGGTGAATGCAGAAGCGGCAGTAAGAGAGATGCTGAAGTCCGTTGGTCATAGAATTTCATCCAAGTCAAATGAACTCGTGACTATTGAAGAAGAGGACTACATGGATGATGGATCCATTATTCATTTGAAACTGAGCATTGATTCTAATAAAGGAGAAGCAGTTTTCGATTTTGCTGGGACAAGTTCTGAAGTTTATGGTAATTGGAATGCGCCCAAAGCTGTAACAGCTGCAGCTGTCATATACTGTGTCCGCTGTTTAGTGAACGTTGATATTCCTCTCAATCAAGGCTGTTTGGCTCCAGTGAAGATTCTTATTCCAGAAGGCTCATTTCTCTCTCCAAGTGATACTGCTGCTGTAGTAGGAGGTAATGTCCTTACATCTCAGAGGATAACTGATGTTATATTCACTGCATTTCAGGCCTGTGCTTGTTCCCAGGGATGTATGAATAATTTTACATTTGGGGATGATACTTTTGGTTATTATGAAACCATTGGAGGTGGAAGTGGGGCTGGTCCTACCTGGGATGGAACCAGTGGGGTACAGTGCCACATGACAAATACAAGAATGACTGATCCTGAGATATTTGAGCAAAGATATCCAGTGATTCTGCACAAGTTTGGACTTAGAGAAAACAGTGGAGGAGATGGATTTCACAAAGGTGGTGATGGTCTTCTCCGAGAAATAGAGTTTAGGCGCCCAGTAATTGTTAGCATTCTTTCTGAGAGGCGTGTCCATGCACCAAGAGGGCTCAAGGGAGGAAAAGATGGTGCTCGTGGAGCTAACTACCTTGTAAAGAAAGATAAACGAAAGATTTATCTCGGTGGTAAGAATACAGTCGAAGTGCTTCCAGGGGAAATTCTTCAGATTTTGACTCCTGGCGGTGGCGGATGGGGTTCTCCATTGTGA
>Glyma08g07400.1 sequence type=predicted peptide gene model=Glyma08g07400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSVTEGKLRFCIDRGGTFTDVYAEIPGQTDGQVLKLLSVDPLNYDDAPVEGIRRILEEFTGEKIPRNSKIPTEKIEWIRMGTTVATNALLERKGERIAVCVTRGFRDLLQIGNQARPSIFDLTVLKPSNLYEEVVEVEERVQLVQSEEEEEKQGGSSSVVKGISGELVRIVKPLNEEALKPVLKNLLDKGISCLAVVLMHSYTYPQHEQQVKKLALSLGFRHVSISSALSPMVRAVPRGLTAGVDAYLTPVIKEYLSGFISKFDEGIGKLNVLFMQSDGGLAPESTFSGHKAILSGPAGGVVGYSQTLFGLETDKPLIGFDMGGTSTDVSRYAGSYEQVLETQIAGAIIQAPQLDINTVAAGGGSKLKFQFGTFQAGPESVGAHPGPVCYRKGGELAITDANLVLGYVIPDYFPSIFGPNEDQPLDFKSTRGEFEKLARQINTHRRNQDPSSKDMTVEEIALGFVDVANETMCRPIRQLTEMKGHETKNHSLACFGGAGPQHACAIARSLGMKEVLIHRFCGILSAYGMGLANVVEEAQEPYSAVYGVESIVEVSQREAVLLRQVKQKLQIQGFKEENISTETYLNLRYEGTDTAIMVKRQVAEDGNLCDYATEFVRLFQQEYGFKLQNRNIVICDVRVRGIGVTNILRPQAIEPAPGSPIVEGYYKVYFGNGWQETPLYKLEKLGYGHMMSGPAIIMNGNSTVIVEPNCRAIITKYGNIKIEIESPLTSVKISDKVADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFDPSGGLVANAPHVPVHLGAMSSTVQWQLNYWGDNLNEGDVLVTNHPSAGGSHLPDITVITPVFFNGKLVFFVANRGHHAEIGGTTPGSMPPFSKSILEEGAAIKAFKLVEKGIFQEEGIIKLLQFPSSDGRGNKIAGTRRIQDNLSDLRAQVAANQRGISLVLELIEQYGLETVQAYMNYVQVNAEAAVREMLKSVGHRISSKSNELVTIEEEDYMDDGSIIHLKLSIDSNKGEAVFDFAGTSSEVYGNWNAPKAVTAAAVIYCVRCLVNVDIPLNQGCLAPVKILIPEGSFLSPSDTAAVVGGNVLTSQRITDVIFTAFQACACSQGCMNNFTFGDDTFGYYETIGGGSGAGPTWDGTSGVQCHMTNTRMTDPEIFEQRYPVILHKFGLRENSGGDGFHKGGDGLLREIEFRRPVIVSILSERRVHAPRGLKGGKDGARGANYLVKKDKRKIYLGGKNTVEVLPGEILQILTPGGGGWGSPL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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