Glyma08g07400 - SoyBase

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Report for Sequence Feature Glyma08g07400

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5294827
stop:	5299544
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g07400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G37830	AT	Annotation by Michelle Graham. TAIR10: oxoprolinase 1 \| chr5:15056635-15060525 REVERSE LENGTH=1266	SoyBase	E_val: 0	ISS
GO:0006751	GO-bp	Annotation by Michelle Graham. GO Biological Process: glutathione catabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0017168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 5-oxoprolinase (ATP-hydrolyzing) activity	SoyBase	N/A	ISS
KOG1939	KOG	Oxoprolinase	JGI		ISS
PTHR11365	Panther	5-OXOPROLINASE RELATED	JGI		ISS
PF01968	PFAM	Hydantoinase/oxoprolinase	JGI		ISS
PF02538	PFAM	Hydantoinase B/oxoprolinase	JGI		ISS
PF05378	PFAM	Hydantoinase/oxoprolinase N-terminal region	JGI		ISS
UniRef100_B9SP24	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 5-oxoprolinase, putative n=1 Tax=Ricinus communis RepID=B9SP24_RICCO	SoyBase	E_val: 0	ISS
UniRef100_G7JV66	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G7JV66_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g07400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g07400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g069400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g07400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g07400

Limit To All Plant Sequences

>Glyma08g07400.1   sequence type=CDS   gene model=Glyma08g07400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGCGTTACTGAAGGGAAGTTGAGGTTTTGTATTGATAGAGGGGGCACGTTTACTGATGTGTATGCAGAAATCCCTGGTCAGACTGATGGGCAAGTTTTGAAGCTTCTGTCGGTTGACCCTTTGAACTATGATGATGCACCGGTGGAAGGGATACGGAGGATTCTTGAAGAATTCACTGGTGAGAAAATTCCACGCAACTCAAAGATACCCACTGAGAAGATTGAGTGGATAAGGATGGGTACAACTGTGGCAACGAATGCACTTTTAGAGCGCAAGGGAGAAAGGATTGCAGTGTGTGTGACTCGAGGCTTTCGTGATTTACTCCAGATAGGGAACCAGGCTCGCCCCAGCATATTTGACCTTACTGTGTTGAAGCCATCAAATCTCTATGAAGAAGTTGTGGAGGTTGAAGAGAGAGTTCAACTTGTTCAGTCTGAGGAAGAAGAAGAAAAGCAGGGTGGTTCTTCATCTGTGGTTAAGGGAATTTCAGGGGAGCTTGTCAGGATTGTGAAGCCTCTTAATGAAGAAGCACTGAAGCCAGTACTGAAAAACTTATTGGACAAAGGAATTAGTTGTTTGGCTGTTGTTTTGATGCACTCATACACTTATCCACAACATGAACAACAGGTCAAGAAGTTAGCTTTGAGTCTGGGATTCAGACATGTTTCCATATCATCTGCTTTGAGTCCCATGGTCCGTGCTGTTCCTCGTGGTCTAACAGCTGGTGTAGATGCTTATCTGACCCCAGTTATTAAAGAATACCTATCAGGATTCATCTCCAAATTTGATGAGGGAATTGGAAAGTTGAATGTTTTGTTTATGCAATCAGATGGAGGACTTGCACCTGAGAGTACCTTCTCAGGGCACAAAGCAATTTTATCTGGTCCTGCTGGTGGAGTTGTTGGTTACTCACAAACTCTTTTTGGGCTTGAAACAGATAAGCCACTAATTGGGTTTGATATGGGGGGAACATCTACAGATGTGAGTCGGTATGCAGGTAGTTATGAGCAAGTGCTGGAAACCCAGATTGCCGGTGCCATAATTCAAGCACCTCAGCTTGACATAAACACTGTAGCTGCTGGTGGTGGTTCAAAGTTGAAGTTCCAATTTGGTACTTTTCAAGCTGGACCAGAATCAGTTGGAGCACACCCTGGTCCCGTATGTTACCGAAAAGGTGGAGAGTTGGCAATTACTGATGCTAACCTAGTTCTGGGATATGTTATTCCTGATTATTTCCCTTCTATATTTGGTCCAAATGAAGATCAGCCTCTTGATTTCAAGTCAACTAGAGGAGAATTTGAGAAGCTTGCCAGGCAAATAAATACTCACCGAAGGAATCAGGATCCATCTTCAAAAGACATGACAGTGGAAGAGATTGCACTTGGCTTTGTGGATGTTGCTAATGAGACAATGTGTCGTCCTATAAGACAGTTGACTGAAATGAAGGGCCATGAGACAAAGAACCATTCACTTGCTTGCTTTGGTGGTGCTGGACCTCAGCATGCTTGTGCTATAGCTAGGTCGTTAGGTATGAAAGAAGTGCTCATTCACAGATTTTGTGGGATCTTAAGTGCATATGGAATGGGGTTGGCAAATGTTGTGGAAGAGGCACAGGAACCTTATTCTGCAGTGTATGGAGTTGAATCTATTGTTGAGGTCTCACAACGAGAAGCTGTTTTACTTAGACAGGTAAAGCAGAAATTGCAAATTCAAGGATTTAAGGAGGAAAATATTTCAACAGAGACATATTTAAACTTGAGATATGAAGGTACAGACACTGCCATCATGGTCAAAAGACAAGTAGCTGAAGATGGAAATTTATGTGACTATGCTACTGAGTTTGTGAGATTGTTTCAACAGGAATACGGCTTTAAACTCCAGAATAGGAATATTGTTATCTGTGATGTTAGAGTTCGTGGTATAGGAGTCACCAATATATTGAGGCCACAGGCCATAGAACCTGCCCCTGGCAGTCCTATAGTTGAAGGCTACTATAAGGTTTACTTTGGGAATGGTTGGCAGGAAACACCTCTCTATAAGCTTGAAAAGCTGGGCTATGGTCATATGATGTCTGGGCCAGCAATCATCATGAATGGCAATAGCACTGTGATTGTAGAACCCAACTGTAGAGCCATTATAACCAAATACGGAAACATCAAGATTGAAATAGAGTCCCCTTTAACCAGTGTTAAAATATCAGATAAAGTTGCAGATGTTGTACAGCTCTCCATCTTCAATCACAGATTTATGGGTATAGCTGAGCAGATGGGAAGGACACTACAAAGAACTTCCATTTCAACAAATATCAAAGAACGGCTTGATTTTTCCTGTGCTCTATTTGATCCTAGTGGGGGCCTAGTTGCAAATGCACCTCATGTTCCTGTCCATCTAGGAGCTATGTCTAGTACAGTTCAGTGGCAGCTCAATTACTGGGGTGACAATTTAAATGAAGGAGATGTTTTGGTTACTAATCATCCATCTGCTGGAGGTAGCCATCTTCCTGATATAACTGTTATTACACCTGTTTTCTTCAATGGGAAGTTGGTTTTTTTTGTGGCAAATAGAGGGCATCATGCAGAGATCGGGGGTACTACCCCTGGAAGCATGCCGCCTTTTTCAAAATCCATATTGGAGGAAGGAGCTGCCATTAAGGCATTTAAGCTTGTTGAAAAAGGTATCTTTCAAGAAGAGGGGATCATTAAACTTCTGCAGTTCCCAAGCTCTGATGGTCGAGGAAATAAGATAGCAGGAACTCGCAGGATTCAAGATAACTTGTCAGATCTGCGAGCGCAAGTAGCAGCAAATCAAAGAGGAATTTCTCTAGTTCTAGAGCTCATTGAGCAGTATGGTCTTGAAACAGTTCAGGCTTACATGAATTATGTACAGGTGAATGCAGAAGCGGCAGTAAGAGAGATGCTGAAGTCCGTTGGTCATAGAATTTCATCCAAGTCAAATGAACTCGTGACTATTGAAGAAGAGGACTACATGGATGATGGATCCATTATTCATTTGAAACTGAGCATTGATTCTAATAAAGGAGAAGCAGTTTTCGATTTTGCTGGGACAAGTTCTGAAGTTTATGGTAATTGGAATGCGCCCAAAGCTGTAACAGCTGCAGCTGTCATATACTGTGTCCGCTGTTTAGTGAACGTTGATATTCCTCTCAATCAAGGCTGTTTGGCTCCAGTGAAGATTCTTATTCCAGAAGGCTCATTTCTCTCTCCAAGTGATACTGCTGCTGTAGTAGGAGGTAATGTCCTTACATCTCAGAGGATAACTGATGTTATATTCACTGCATTTCAGGCCTGTGCTTGTTCCCAGGGATGTATGAATAATTTTACATTTGGGGATGATACTTTTGGTTATTATGAAACCATTGGAGGTGGAAGTGGGGCTGGTCCTACCTGGGATGGAACCAGTGGGGTACAGTGCCACATGACAAATACAAGAATGACTGATCCTGAGATATTTGAGCAAAGATATCCAGTGATTCTGCACAAGTTTGGACTTAGAGAAAACAGTGGAGGAGATGGATTTCACAAAGGTGGTGATGGTCTTCTCCGAGAAATAGAGTTTAGGCGCCCAGTAATTGTTAGCATTCTTTCTGAGAGGCGTGTCCATGCACCAAGAGGGCTCAAGGGAGGAAAAGATGGTGCTCGTGGAGCTAACTACCTTGTAAAGAAAGATAAACGAAAGATTTATCTCGGTGGTAAGAATACAGTCGAAGTGCTTCCAGGGGAAATTCTTCAGATTTTGACTCCTGGCGGTGGCGGATGGGGTTCTCCATTGTGA

Predicted protein sequences of Glyma08g07400

Limit To All Plant Sequences

>Glyma08g07400.1   sequence type=predicted peptide   gene model=Glyma08g07400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSVTEGKLRFCIDRGGTFTDVYAEIPGQTDGQVLKLLSVDPLNYDDAPVEGIRRILEEFTGEKIPRNSKIPTEKIEWIRMGTTVATNALLERKGERIAVCVTRGFRDLLQIGNQARPSIFDLTVLKPSNLYEEVVEVEERVQLVQSEEEEEKQGGSSSVVKGISGELVRIVKPLNEEALKPVLKNLLDKGISCLAVVLMHSYTYPQHEQQVKKLALSLGFRHVSISSALSPMVRAVPRGLTAGVDAYLTPVIKEYLSGFISKFDEGIGKLNVLFMQSDGGLAPESTFSGHKAILSGPAGGVVGYSQTLFGLETDKPLIGFDMGGTSTDVSRYAGSYEQVLETQIAGAIIQAPQLDINTVAAGGGSKLKFQFGTFQAGPESVGAHPGPVCYRKGGELAITDANLVLGYVIPDYFPSIFGPNEDQPLDFKSTRGEFEKLARQINTHRRNQDPSSKDMTVEEIALGFVDVANETMCRPIRQLTEMKGHETKNHSLACFGGAGPQHACAIARSLGMKEVLIHRFCGILSAYGMGLANVVEEAQEPYSAVYGVESIVEVSQREAVLLRQVKQKLQIQGFKEENISTETYLNLRYEGTDTAIMVKRQVAEDGNLCDYATEFVRLFQQEYGFKLQNRNIVICDVRVRGIGVTNILRPQAIEPAPGSPIVEGYYKVYFGNGWQETPLYKLEKLGYGHMMSGPAIIMNGNSTVIVEPNCRAIITKYGNIKIEIESPLTSVKISDKVADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFDPSGGLVANAPHVPVHLGAMSSTVQWQLNYWGDNLNEGDVLVTNHPSAGGSHLPDITVITPVFFNGKLVFFVANRGHHAEIGGTTPGSMPPFSKSILEEGAAIKAFKLVEKGIFQEEGIIKLLQFPSSDGRGNKIAGTRRIQDNLSDLRAQVAANQRGISLVLELIEQYGLETVQAYMNYVQVNAEAAVREMLKSVGHRISSKSNELVTIEEEDYMDDGSIIHLKLSIDSNKGEAVFDFAGTSSEVYGNWNAPKAVTAAAVIYCVRCLVNVDIPLNQGCLAPVKILIPEGSFLSPSDTAAVVGGNVLTSQRITDVIFTAFQACACSQGCMNNFTFGDDTFGYYETIGGGSGAGPTWDGTSGVQCHMTNTRMTDPEIFEQRYPVILHKFGLRENSGGDGFHKGGDGLLREIEFRRPVIVSILSERRVHAPRGLKGGKDGARGANYLVKKDKRKIYLGGKNTVEVLPGEILQILTPGGGGWGSPL*

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