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Report for Sequence Feature Glyma08g07330

Feature Type:gene_model
Chromosome:Gm08
Start:5260106
stop:5260914
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g07330
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G07400AT Annotation by Michelle Graham. TAIR10: HSP20-like chaperones superfamily protein | chr1:2275148-2275621 FORWARD LENGTH=157 SoyBaseE_val: 8.00E-80ISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
KOG0710 KOG Molecular chaperone (small heat-shock protein Hsp26/Hsp42) JGI ISS
PTHR11527Panther SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY JGI ISS
PTHR11527:SF14Panther LETHAL(2) ESSENTIAL FOR LIFE - RELATED JGI ISS
PF00011PFAM Hsp20/alpha crystallin family JGI ISS
UniRef100_C6T5U3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T5U3_SOYBN SoyBaseE_val: 6.00E-105ISS
UniRef100_P02519UniRef Annotation by Michelle Graham. Most informative UniRef hit: 17.3 kDa class I heat shock protein n=2 Tax=Glycine max RepID=HSP11_SOYBN SoyBaseE_val: 7.00E-102ISS

Expression Patterns of Glyma08g07330
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g07330 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g068700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g07330
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g07330
>Glyma08g07330.1   sequence type=CDS   gene model=Glyma08g07330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTGATTCCAAGTTTCTTCGGTGGCCGAAGGAGCAGTGTTTTCGACCCTTTCTCCCTCGATGTGTGGGAGCCCTTTAAGGATTTTCCATTTCCCAGTTCTCTTTCTGCTGAAAATTCAGCCTTTGTGAGCACACGAGTGGATTGGAAGGAGACACCAGAAGCACACGTGTTCAAGGCTGATATTCCAGGGCTGAAGAAGGAGGAAGTGAAGCTGGAGATTCAAGATGACAGAGTTCTTCAGATAAGCGGAGAGAGGAATGTTGAAAAAGAAGACAAGAATGATACGTGGCATCGCGTGGAGCGAAGCAGTGGTAAGTTCATGAGGAGGTTTAGATTGCCGGAGAATGCTAAAGTGGATCAAGTTAAGGCTTCCATGGAAAATGGGGTTCTCACTGTAACTGTTCCTAAGGAAGAGATTAAGAAGCCTGATGTTAAGGCCATTGACATCTCTGGTTAA
Predicted protein sequences of Glyma08g07330
>Glyma08g07330.1   sequence type=predicted peptide   gene model=Glyma08g07330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLIPSFFGGRRSSVFDPFSLDVWEPFKDFPFPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG*






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