Glyma08g07270 - SoyBase

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Report for Sequence Feature Glyma08g07270

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5232668
stop:	5235870
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g07270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64360	AT	Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein \| chr5:25737208-25738602 REVERSE LENGTH=464	SoyBase	E_val: 1.00E-107	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
PTHR25040	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25040:SF41	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
UniRef100_I1KQZ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQZ0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9FMF3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5G64360 protein n=1 Tax=Arabidopsis thaliana RepID=Q9FMF3_ARATH	SoyBase	E_val: 6.00E-105	ISS

Expression Patterns of Glyma08g07270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07270

Paralog	Evidence	Comments
Glyma07g30025	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g068300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g07270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g07270

Limit To All Plant Sequences

>Glyma08g07270.1   sequence type=CDS   gene model=Glyma08g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGGCGGGAACCGACCGGAGGCGGAGCGCTGGCTATACACCGCCAACAAGCTCCTGAGCGCGCGTGACCTGCACGGTGCGCGCTCCTTCGCCATCCGCGCGCGTGAGTCGGACCCGACCTACGATGCCTCGGAGCACCTCCTGACGGTCATCGACACGCTCCTCGCCGGCGAGTCGCGGATCAACGACCACCACCGCGACTGGTACGGGATCCTCCAGATTCTCCGCTACGCCACCAACATGGACCACATCGCCGCCCAGTATCGCCGCCTCGCGCTCCTCCTCGACCCTCACCGCAACATGTTCGCCTTCGCCAGCCACGCCTTCTCCCTCGTCAACGACGCCTGGTCCGTTCTCTCCAATTCCGCCAAGAAAGCCATGTACGACAGCGAGCTCCGCTTGCTCACCGCTCCGGCGCCGCCGCAACATCATCCTCTTCCCCCGCAGCCTCAACCCACGCCGAGGCGAAACCCTAGATCGAGGGACGAGCCGAATCCTAACCGTCCCGAGTCGGCTGAGTCGAGTCGGCAGACTCGGACCGTGGAAACTGATACAGGAACAAGTTTCTGGACCTCGTGTCCTTATTGTTATGTGCTGTATGAATATCCCAAGGTTTATGAGGAGTGTACCTTACGGTGCCAGAGTTGTCGGAGAGGGTTTCATGCGGTGGTGATACGGTCGCCGCCGCCGTTGAGTGGGAAAGACGGTTCTTATTGTAGTTGGGGGTTTTTCCCGTTAGGGTTTTCTGGGAATTCGAAGGATGTGAACGGGCATGCCTCGAATTGGAACCCGTTTTCGCCTTTGTTTCCTTGCCCCTTGAAGGGGTCGTCCAAAAGGAGGCCTCAGAGGAACTGGGCTTACTATGACGACGATGCTGCGGCCGCGTTTATAGAGTTGTCGGACCCGAGTGACGACGATTCCGGTGATGGGGACTGGAGGGTTGGGAAGAATAGGGGGAGGAAGAGGACTAGAGGGAAGAAAAATTCTGGTGATGGTAGGAGGGAGCCTGTGGAGAGAACTAGGAGGGGTGCTCATGTAGGAAATGATAATGTGGGTTCTGGTGCTAGTGGTAATGTTAATGCTAATGCTGCCTCTGCTGTGCTGGCTGGTGCGAGGGGGGAGTCTAGTAAGAAGGCTGCATTGGGTGGTTTGAGGAGGCGGGGGGCAGGAAACTTGGGGAAGTTGGATTTGAATGTGGAGTTTAGCAATGAGGTGGAGGAGCCTTCCCGTGGAGTGCACAACCGCGAAGGGAATGCTGCTGGACATGCTGAGGATAATATTGAAGGGATTGGGTTTTTTGAAGGCCTTGATGAGTTCCTCAGTAGCTTGCCCATTCTCAATGTTGTGGCAGATGATAAGGCTTAA

Predicted protein sequences of Glyma08g07270

Limit To All Plant Sequences

>Glyma08g07270.1   sequence type=predicted peptide   gene model=Glyma08g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGGNRPEAERWLYTANKLLSARDLHGARSFAIRARESDPTYDASEHLLTVIDTLLAGESRINDHHRDWYGILQILRYATNMDHIAAQYRRLALLLDPHRNMFAFASHAFSLVNDAWSVLSNSAKKAMYDSELRLLTAPAPPQHHPLPPQPQPTPRRNPRSRDEPNPNRPESAESSRQTRTVETDTGTSFWTSCPYCYVLYEYPKVYEECTLRCQSCRRGFHAVVIRSPPPLSGKDGSYCSWGFFPLGFSGNSKDVNGHASNWNPFSPLFPCPLKGSSKRRPQRNWAYYDDDAAAAFIELSDPSDDDSGDGDWRVGKNRGRKRTRGKKNSGDGRREPVERTRRGAHVGNDNVGSGASGNVNANAASAVLAGARGESSKKAALGGLRRRGAGNLGKLDLNVEFSNEVEEPSRGVHNREGNAAGHAEDNIEGIGFFEGLDEFLSSLPILNVVADDKA*

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