SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G65420 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF565) | chr1:24297669-24298374 REVERSE LENGTH=197 | SoyBase | E_val: 3.00E-67 | ISS |
| GO:0010196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nonphotochemical quenching | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF04483 | PFAM | Protein of unknown function (DUF565) | JGI | ISS | |
| UniRef100_C6TEB6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TEB6_SOYBN | SoyBase | E_val: 1.00E-147 | ISS |
| UniRef100_G7JCQ1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ycf20-like protein n=1 Tax=Medicago truncatula RepID=G7JCQ1_MEDTR | SoyBase | E_val: 5.00E-77 | ISS |
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Glyma08g07240 not represented in the dataset |
Glyma08g07240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g30060 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g068000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g07240.2 sequence type=transcript gene model=Glyma08g07240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGGTAGTAATAAGTAATGTTGCATGATTTTTAGTAACGTGTTATTCTGTTTGCACTATAACAGAGAATCAACCATAATTTCTGTAGATGGATCCACAGGGGTCTTGAAATTGCCTGCAATTGCTTTAACATTTTACTGTCCAACAGAGGGGGCTTGACTGTTGTTGTTTTAACATATTTTTTGTTTCTTGAGCAACTGATGCTTAAGTATAGATAAAGCTCCCCTCCAGTTTGCCTTTAAAGTGCACACGGGTGTATCTTGTATACTTACCCTTGAATTTTAGTTGTGGGTTTAGATCACTGGTTTGTGATGTACTCTTAAATTAATGGAGCGTGGATATACATACCCTTAGGAGCTTTTTAGGGTGAATATAGTTGTTTCTTTGCGTGTAATTACTGTTTTCAATTGTGGCTTTTGCAAATTCTTGACTAGGCCACGTTTTATTCCACTCTATTTACATCGCTGCATGGGAATTTTGTGTAACTAAATGCATGTTTTTACCCAACTGGATTTAAGGAACTGGGGTTGCTTGCTTTCTTTTCTATTTTATTCACTTAATTGTTGAATGCTTCCAGACTGTTTATAAACTATTCACTTGCCTCGTATTGGCAGTTTCTAAAAGTTCTCATATGTAAGTGTGCTTTCAAATAAACTATGCTTGTAACTGTTTTACAATAACATATCCTGAAGTGAACTGCTTATGTGTTTGCGATTTTTTTTTTTAGCTTATCTTCATAATCTGCACTTGAGCTTACAAAAACAAATGCAAACATCTCATCATTCATAAGATGATCCAGAATCTAGATACAGTTTTGGACTTAGAAATTTCAATACTTTAAAGTTTAGAAAATTATATAATGCACATTGATTTTGCTAACTTAAAAGTTGAAACCTGACCACCTGTAAACATGATGATTCCTAATTATCCTCTCGTTATACTCAGTACTAATCTAAGACTATCACAACAGTCCTCTTGAAACCTAGACAATCTTCTGAATTGTAGAAACCTGCAACAATTATTCTCCTAAGTTTTTGCTTCTGTCATGATAAATATACAAGATGATAGTGCTTTGTTGATCACTGCCTATGAGAATCTCTTCTTGTTCAATGCCTTGAACCAACCCGGCCAAATCCTCCCAAAACATTTATTTCAAAAGTGCTTCTTATCCTACTTGTGGACTTGTGGTGCATAAACACTGATGATATTGATAGTCTCTTGTGTAACCATTAACCATTAAGTTTAAAGATAAGATTTTGTCCCCTATCCATTATACATCCACCACATTTTTCTTCCAATTCCTGTCCACAATATACCCACTCCATTCTTTCTTCTAACCTTTATGGCATACCAAAGTTTAATCCTTGTATTGTCTAGCTCAGTTTTTTCTCCAGCCCATTTAGTTTCTTGAAGATAAATGATGTTAGTTCTTCTCCTTCTGATGACGTTCACCATCTCTAAAGACTTGTCAAAGTATCAATAATCAAAGGACTAAACTTAATCAAGCATTCTTGAACTAGCTTCTTTACTTACATCGATACAGAAAAATGTGAGGACCTTGTTCATTTAACACTGCATCTGAACGCTGATACATTGACTAGCTCATTTAACACTGTGTTTGAGCCATACAATGCATTACTTCCGAGTAACAGCCTAGTATTAGTATGAATCTGTTGTGAGTGATCCATAGTTGAGGTTTTGGCAAGTTTTATGTTGGTTGTCAAGGAGCCTAACTCAAATCTTTTCCTTTACCTGGGCTAGGGGCTGACTATGAGCCCATAGGCGGTTTTAGTGTAACATATATAGCAATTAAAAAAAGAGTTAGTGTGTCATATTAGTAATTAAAAAAAAAATGCAAAGATATTTTTAGGTTCCTCTGGCCCCTTAGAAGTTCCGTCATTTTCTATGTACATGATTTTTTTATATGCAATTTCCTTGTTTTATAACCACCATTAATAAAAGTCAAGAGGTCTGATTGCCAATCTCAACCCTCTCAGTATTATGCCTTAAAACTCATCCAATACATTCTAGTTTTAAGTTTTAACTCATGTTGATTTGTGGTTCAATGGTTGATGCATTCATTATATGAAGCTCGGCATATAACTTCTTGAGATTTCGAACCTGTGCAGATTAGGAGCCTGAGAGCACTATATCTTCTTAATCCATGGCTTGTCAAATGGGATCTACGATTCTGAAATGGAGATTATCAATTACAGATTATAAAAGCTCTGAAAATTCATGTATAGCCCTTGCAACTTCCAGAATCCACTGTTGTTGCTGTGAGACAAATTTTAACAGGCTAACTCTAAATGGCACAAAGTCTTCACCTTTTTCTCAGAGCTGTTTCTTGGGAAGAAGAGCTGGGTGGAAAATAGCTTTTGCCTTGAACACAGGTGGAGTGTCTGGAAATGGTGACCAACAAAGCTTCAACGAAGCCAGTTCCAATCTTGGTGGTACTCGATTGGGTAGGATACTGAGTGCGGGTGGCAGACAACTTCTAGAAAAGCTGAACGCAGCTAGAAAGAATATCCCTTTGAAAGTATTCCTGCTACTTTTGGGTTTCTACACGGCAAATGCACTAGCTACAATCCTTGGACAAACTGGTGACTGGGATGTTCTGGTTGCTGGTGTTGTGGTAGCTGCAATTGAGGGGATCGGCATGCTAATATATAGAAAGCCGCCTACTGAGAAGACTGGGAGGTTGCAGTCTTTTCTAGTGCTGGTGAACTACTGGAAAGCTGGCATATGTTTAGGTCTCTTTGTAGATGCTTTTAAGTTAGGCAGCTAAGAACTCAAAATCTTGTGCTTCTTGCTTTCTCTTTTCAATTTTTTGATGTATGTCATAAAACTCTGCTAAGCCATAATTTTGACCGTGGTCTTCTTCTATTGCTATCTTATAGTGGTGTACATGTAATTGTAATATGTGAATAGTATATATGACGATTGTTTAATGACTTTATGGCTCTGTGCACGGTGCACCATTTTGCATGTGCTTGGTGAAAGAGAAACTGTTATATTCATTTGTTTGTAAATTTGTACTGGTGGCTGAGTTTCACTGTTGAAAAGGGAAAAAATTTATTGGGAGTCACTGGAGCTACTTAAATTATACTAATGCAGG
>Glyma08g07240.1 sequence type=CDS gene model=Glyma08g07240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTGTCAAATGGGATCTACGATTCTGAAATGGAGATTATCAATTACAGATTATAAAAGCTCTGAAAATTCATGTATAGCCCTTGCAACTTCCAGAATCCACTGTTGTTGCTGTGAGACAAATTTTAACAGGCTAACTCTAAATGGCACAAAGTCTTCACCTTTTTCTCAGAGCTGTTTCTTGGGAAGAAGAGCTGGGTGGAAAATAGCTTTTGCCTTGAACACAGGTGGAGTGTCTGGAAATGGTGACCAACAAAGCTTCAACGAAGCCAGTTCCAATCTTGGTGGTACTCGATTGGGTAGGATACTGAGTGCGGGTGGCAGACAACTTCTAGAAAAGCTGAACGCAGCTAGAAAGAATATCCCTTTGAAAGTATTCCTGCTACTTTTGGGTTTCTACACGGCAAATGCACTAGCTACAATCCTTGGACAAACTGGTGACTGGGATGTTCTGGTTGCTGGTGTTGTGGTAGCTGCAATTGAGGGGATCGGCATGCTAATATATAGAAAGCCGCCTACTGAGAAGACTGGGAGGTTGCAGTCTTTTCTAGTGCTGGTGAACTACTGGAAAGCTGGCATATGTTTAGGTCTCTTTGTAGATGCTTTTAAGTTAGGCAGCTAA >Glyma08g07240.2 sequence type=CDS gene model=Glyma08g07240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTGTCAAATGGGATCTACGATTCTGAAATGGAGATTATCAATTACAGATTATAAAAGCTCTGAAAATTCATGTATAGCCCTTGCAACTTCCAGAATCCACTGTTGTTGCTGTGAGACAAATTTTAACAGGCTAACTCTAAATGGCACAAAGTCTTCACCTTTTTCTCAGAGCTGTTTCTTGGGAAGAAGAGCTGGGTGGAAAATAGCTTTTGCCTTGAACACAGGTGGAGTGTCTGGAAATGGTGACCAACAAAGCTTCAACGAAGCCAGTTCCAATCTTGGTGGTACTCGATTGGGTAGGATACTGAGTGCGGGTGGCAGACAACTTCTAGAAAAGCTGAACGCAGCTAGAAAGAATATCCCTTTGAAAGTATTCCTGCTACTTTTGGGTTTCTACACGGCAAATGCACTAGCTACAATCCTTGGACAAACTGGTGACTGGGATGTTCTGGTTGCTGGTGTTGTGGTAGCTGCAATTGAGGGGATCGGCATGCTAATATATAGAAAGCCGCCTACTGAGAAGACTGGGAGGTTGCAGTCTTTTCTAGTGCTGGTGAACTACTGGAAAGCTGGCATATGTTTAGGTCTCTTTGTAGATGCTTTTAAGTTAGGCAGCTAA
>Glyma08g07240.1 sequence type=predicted peptide gene model=Glyma08g07240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MACQMGSTILKWRLSITDYKSSENSCIALATSRIHCCCCETNFNRLTLNGTKSSPFSQSCFLGRRAGWKIAFALNTGGVSGNGDQQSFNEASSNLGGTRLGRILSAGGRQLLEKLNAARKNIPLKVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLIYRKPPTEKTGRLQSFLVLVNYWKAGICLGLFVDAFKLGS* >Glyma08g07240.2 sequence type=predicted peptide gene model=Glyma08g07240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MACQMGSTILKWRLSITDYKSSENSCIALATSRIHCCCCETNFNRLTLNGTKSSPFSQSCFLGRRAGWKIAFALNTGGVSGNGDQQSFNEASSNLGGTRLGRILSAGGRQLLEKLNAARKNIPLKVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLIYRKPPTEKTGRLQSFLVLVNYWKAGICLGLFVDAFKLGS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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