Glyma08g07230 - SoyBase

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Report for Sequence Feature Glyma08g07230

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5196207
stop:	5200991
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g07230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33625	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 59 Blast hits to 59 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). \| chr4:16153114-16154543 REVERSE LENGTH=200	SoyBase	E_val: 4.00E-94	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF08507	PFAM	COPI associated protein	JGI		ISS
UniRef100_I1KQY5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQY5_SOYBN	SoyBase	E_val: 1.00E-137	ISS

Expression Patterns of Glyma08g07230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07230

Paralog	Evidence	Comments
Glyma07g30080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g067800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g07230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g07230

Limit To All Plant Sequences

>Glyma08g07230.2   sequence type=transcript   gene model=Glyma08g07230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGCCACGTGTTGTTTTCCCACTGGAATGAAAACTCAGACACAGATATCGAAGCAGAGAAAATCAAAAGCGAATGCGATTAAAAAAAAAGATTCCCGTTCCCATTCTCCACCCTCAACCTTGTGTTACCTCCGATAGTAATAACCAGCGTTCATCCACAAAATGTCTCGAAACGACGACGTAGTGGAACAGAACGCGGCCACCACCACCACCACGTCGTCGACCACTATAAGAAACAGAGCAGACCCGTTCCTGGTAGCGTGCAGATGCTTCAGCTTCCTCACCTCTCTCGCCGCCATTCTCTGCATCGCCGTCAATGTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACATTTTCGACGGCATATTCCGGTGCTACGCCGTTCTTATAGCGGCTTTCGTGGTCCTCGCCGAGACCGAATGGAGTTTCATCATAAAGTTCTCGAAGGTTTTGGAGTATTGGGCTGCCAGGGGTATGCTGCAGATCTTTGCTGCAGTCATGACAAGGGCATTTCCTGGCTATATTGGGGACCGGAGGGACCTTTTTCTTCTACAGAGCATAGCAAGTTATTTGCTACTTGCCTGTGGTGTTGTTTATGTTGTTTCAGGTATCCTTTGCATTGGTTTTCTTAAACGTGCCCGCCAGAAGCAAGAGATTACAAGAGAGCAAGCCACCAAGGATCTAGAGGAGTTGGAACGCCGCAGAGAGGAACTTGAACAACTACTCCTTGCTGAGAGAGTTTAAAACATTTTGAACGTAGTGCTGAAATTAATCTGTAGTGAAGGTAAGTCTACTGCAAGCCTATGAATCTCTGTTTATGTTAGTAATGCTTACAGAATTGCTAGTTCATTCTTTGTATATTGGGTTATGTTCTTAGATGTAGGCCATTAAAGGTTGGCTATTCGGCCTGTCTCTGTAAATATATAAAATAATGTTTAAAATTGTCTCAGATTTTATAGAGGCTTGGATCCAATTATAAATGACGATATTTAATTAAATCTTCAGTTTGT

Coding sequences of Glyma08g07230

Limit To All Plant Sequences

>Glyma08g07230.1   sequence type=CDS   gene model=Glyma08g07230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCGAAACGACGACGTAGTGGAACAGAACGCGGCCACCACCACCACCACGTCGTCGACCACTATAAGAAACAGAGCAGACCCGTTCCTGGTAGCGTGCAGATGCTTCAGCTTCCTCACCTCTCTCGCCGCCATTCTCTGCATCGCCGTCAATGTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACATTTTCGACGGCATATTCCGGTGCTACGCCGTTCTTATAGCGGCTTTCGTGGTCCTCGCCGAGACCGAATGGAGTTTCATCATAAAGTTCTCGAAGGTTTTGGAGTATTGGGCTGCCAGGGGTATGCTGCAGATCTTTGCTGCAGTCATGACAAGGGCATTTCCTGGCTATATTGGGGACCGGAGGGACCTTTTTCTTCTACAGAGCATAGCAAGTTATTTGCTACTTGCCTGTGGTGTTGTTTATGTTGTTTCAGGTATCCTTTGCATTGGTTTTCTTAAACGTGCCCGCCAGAAGCAAGAGATTACAAGAGAGCAAGCCACCAAGGATCTAGAGGAGTTGGAACGCCGCAGAGAGGAACTTGAACAACTACTCCTTGCTGAGAGAGTTTAA

>Glyma08g07230.2   sequence type=CDS   gene model=Glyma08g07230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCGAAACGACGACGTAGTGGAACAGAACGCGGCCACCACCACCACCACGTCGTCGACCACTATAAGAAACAGAGCAGACCCGTTCCTGGTAGCGTGCAGATGCTTCAGCTTCCTCACCTCTCTCGCCGCCATTCTCTGCATCGCCGTCAATGTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACATTTTCGACGGCATATTCCGGTGCTACGCCGTTCTTATAGCGGCTTTCGTGGTCCTCGCCGAGACCGAATGGAGTTTCATCATAAAGTTCTCGAAGGTTTTGGAGTATTGGGCTGCCAGGGGTATGCTGCAGATCTTTGCTGCAGTCATGACAAGGGCATTTCCTGGCTATATTGGGGACCGGAGGGACCTTTTTCTTCTACAGAGCATAGCAAGTTATTTGCTACTTGCCTGTGGTGTTGTTTATGTTGTTTCAGGTATCCTTTGCATTGGTTTTCTTAAACGTGCCCGCCAGAAGCAAGAGATTACAAGAGAGCAAGCCACCAAGGATCTAGAGGAGTTGGAACGCCGCAGAGAGGAACTTGAACAACTACTCCTTGCTGAGAGAGTTTAA

Predicted protein sequences of Glyma08g07230

Limit To All Plant Sequences

>Glyma08g07230.1   sequence type=predicted peptide   gene model=Glyma08g07230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRNDDVVEQNAATTTTTSSTTIRNRADPFLVACRCFSFLTSLAAILCIAVNVLSAVRSFKHASDIFDGIFRCYAVLIAAFVVLAETEWSFIIKFSKVLEYWAARGMLQIFAAVMTRAFPGYIGDRRDLFLLQSIASYLLLACGVVYVVSGILCIGFLKRARQKQEITREQATKDLEELERRREELEQLLLAERV*

>Glyma08g07230.2   sequence type=predicted peptide   gene model=Glyma08g07230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRNDDVVEQNAATTTTTSSTTIRNRADPFLVACRCFSFLTSLAAILCIAVNVLSAVRSFKHASDIFDGIFRCYAVLIAAFVVLAETEWSFIIKFSKVLEYWAARGMLQIFAAVMTRAFPGYIGDRRDLFLLQSIASYLLLACGVVYVVSGILCIGFLKRARQKQEITREQATKDLEELERRREELEQLLLAERV*

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