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Report for Sequence Feature Glyma08g07230

Feature Type:gene_model
Chromosome:Gm08
Start:5196207
stop:5200991
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G33625AT Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 59 Blast hits to 59 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr4:16153114-16154543 REVERSE LENGTH=200 SoyBaseE_val: 4.00E-94ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF08507PFAM COPI associated protein JGI ISS
UniRef100_I1KQY5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQY5_SOYBN SoyBaseE_val: 1.00E-137ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma07g30080 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g067800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g07230.2   sequence type=transcript   gene model=Glyma08g07230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGCCACGTGTTGTTTTCCCACTGGAATGAAAACTCAGACACAGATATCGAAGCAGAGAAAATCAAAAGCGAATGCGATTAAAAAAAAAGATTCCCGTTCCCATTCTCCACCCTCAACCTTGTGTTACCTCCGATAGTAATAACCAGCGTTCATCCACAAAATGTCTCGAAACGACGACGTAGTGGAACAGAACGCGGCCACCACCACCACCACGTCGTCGACCACTATAAGAAACAGAGCAGACCCGTTCCTGGTAGCGTGCAGATGCTTCAGCTTCCTCACCTCTCTCGCCGCCATTCTCTGCATCGCCGTCAATGTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACATTTTCGACGGCATATTCCGGTGCTACGCCGTTCTTATAGCGGCTTTCGTGGTCCTCGCCGAGACCGAATGGAGTTTCATCATAAAGTTCTCGAAGGTTTTGGAGTATTGGGCTGCCAGGGGTATGCTGCAGATCTTTGCTGCAGTCATGACAAGGGCATTTCCTGGCTATATTGGGGACCGGAGGGACCTTTTTCTTCTACAGAGCATAGCAAGTTATTTGCTACTTGCCTGTGGTGTTGTTTATGTTGTTTCAGGTATCCTTTGCATTGGTTTTCTTAAACGTGCCCGCCAGAAGCAAGAGATTACAAGAGAGCAAGCCACCAAGGATCTAGAGGAGTTGGAACGCCGCAGAGAGGAACTTGAACAACTACTCCTTGCTGAGAGAGTTTAAAACATTTTGAACGTAGTGCTGAAATTAATCTGTAGTGAAGGTAAGTCTACTGCAAGCCTATGAATCTCTGTTTATGTTAGTAATGCTTACAGAATTGCTAGTTCATTCTTTGTATATTGGGTTATGTTCTTAGATGTAGGCCATTAAAGGTTGGCTATTCGGCCTGTCTCTGTAAATATATAAAATAATGTTTAAAATTGTCTCAGATTTTATAGAGGCTTGGATCCAATTATAAATGACGATATTTAATTAAATCTTCAGTTTGT

>Glyma08g07230.1   sequence type=CDS   gene model=Glyma08g07230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCGAAACGACGACGTAGTGGAACAGAACGCGGCCACCACCACCACCACGTCGTCGACCACTATAAGAAACAGAGCAGACCCGTTCCTGGTAGCGTGCAGATGCTTCAGCTTCCTCACCTCTCTCGCCGCCATTCTCTGCATCGCCGTCAATGTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACATTTTCGACGGCATATTCCGGTGCTACGCCGTTCTTATAGCGGCTTTCGTGGTCCTCGCCGAGACCGAATGGAGTTTCATCATAAAGTTCTCGAAGGTTTTGGAGTATTGGGCTGCCAGGGGTATGCTGCAGATCTTTGCTGCAGTCATGACAAGGGCATTTCCTGGCTATATTGGGGACCGGAGGGACCTTTTTCTTCTACAGAGCATAGCAAGTTATTTGCTACTTGCCTGTGGTGTTGTTTATGTTGTTTCAGGTATCCTTTGCATTGGTTTTCTTAAACGTGCCCGCCAGAAGCAAGAGATTACAAGAGAGCAAGCCACCAAGGATCTAGAGGAGTTGGAACGCCGCAGAGAGGAACTTGAACAACTACTCCTTGCTGAGAGAGTTTAA

>Glyma08g07230.2   sequence type=CDS   gene model=Glyma08g07230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCGAAACGACGACGTAGTGGAACAGAACGCGGCCACCACCACCACCACGTCGTCGACCACTATAAGAAACAGAGCAGACCCGTTCCTGGTAGCGTGCAGATGCTTCAGCTTCCTCACCTCTCTCGCCGCCATTCTCTGCATCGCCGTCAATGTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACATTTTCGACGGCATATTCCGGTGCTACGCCGTTCTTATAGCGGCTTTCGTGGTCCTCGCCGAGACCGAATGGAGTTTCATCATAAAGTTCTCGAAGGTTTTGGAGTATTGGGCTGCCAGGGGTATGCTGCAGATCTTTGCTGCAGTCATGACAAGGGCATTTCCTGGCTATATTGGGGACCGGAGGGACCTTTTTCTTCTACAGAGCATAGCAAGTTATTTGCTACTTGCCTGTGGTGTTGTTTATGTTGTTTCAGGTATCCTTTGCATTGGTTTTCTTAAACGTGCCCGCCAGAAGCAAGAGATTACAAGAGAGCAAGCCACCAAGGATCTAGAGGAGTTGGAACGCCGCAGAGAGGAACTTGAACAACTACTCCTTGCTGAGAGAGTTTAA

>Glyma08g07230.1   sequence type=predicted peptide   gene model=Glyma08g07230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRNDDVVEQNAATTTTTSSTTIRNRADPFLVACRCFSFLTSLAAILCIAVNVLSAVRSFKHASDIFDGIFRCYAVLIAAFVVLAETEWSFIIKFSKVLEYWAARGMLQIFAAVMTRAFPGYIGDRRDLFLLQSIASYLLLACGVVYVVSGILCIGFLKRARQKQEITREQATKDLEELERRREELEQLLLAERV*

>Glyma08g07230.2   sequence type=predicted peptide   gene model=Glyma08g07230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRNDDVVEQNAATTTTTSSTTIRNRADPFLVACRCFSFLTSLAAILCIAVNVLSAVRSFKHASDIFDGIFRCYAVLIAAFVVLAETEWSFIIKFSKVLEYWAARGMLQIFAAVMTRAFPGYIGDRRDLFLLQSIASYLLLACGVVYVVSGILCIGFLKRARQKQEITREQATKDLEELERRREELEQLLLAERV*







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