SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G33630 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3506) | chr4:16155560-16159094 FORWARD LENGTH=684 | SoyBase | E_val: 0 | ISS |
| GO:0000302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species | SoyBase | N/A | ISS |
| GO:0000304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to singlet oxygen | SoyBase | N/A | ISS |
| GO:0010039 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to iron ion | SoyBase | N/A | ISS |
| GO:0010343 | GO-bp | Annotation by Michelle Graham. GO Biological Process: singlet oxygen-mediated programmed cell death | SoyBase | N/A | ISS |
| GO:0055072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0042651 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid membrane | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0004518 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nuclease activity | SoyBase | N/A | ISS |
| PF12014 | PFAM | Domain of unknown function (DUF3506) | JGI | ISS | |
| UniRef100_G7JV40 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein EXECUTER n=1 Tax=Medicago truncatula RepID=G7JV40_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KQY3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQY3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g07220 not represented in the dataset |
Glyma08g07220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g30100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g067700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g07220.3 sequence type=transcript gene model=Glyma08g07220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTAACTCTTAGTATAATAGTTAATTAAAATCAAATTAAGTTGTTTTTTACCAATAAGACTTTAGAGTATTTTTTCAAGTTTCATGTTTGGATCAATTATGAGATTATATAAAAATCAAACTTAAGTTTTTTTTTTTCATTTTATGATCTGGATGTTTATTATCAATTGAGATACATCATTAGGTATTAATAATAAGATGTTGTTAATCAATGTCCTCGAAATATTAAAATATTAGTTAAATAATTAAAAACATAAAAATGACAATAAATAGAGCAAGCAGTGGTTATCATTTTGCCTTAGTAGTATATTTTTACTTAATAGCAGTGTGGCTTAGCCTAACTATTGCCAAAACTTTGACCTTTTTGAATGGCAACCCAAACCCATCAAAGGAAAGGTAAGGTAAGAATAACAATTTTGATTTCATCCTTATCCCCTCGTGGCTAGAAAAAATAAAAATCTATTGAGGCAATTTTCACAGCCTCATGTTCCATCCCCTTCACTTCACATTCACAGCACACATCCTTCTTCTTCAACAACACACATATCCATTCTCTCTCATGGCTTCTTCTTCCATTTCCGCACCAACGCTCACCTTCCCGACGCAGAAGCTTGCCGTTCCGTTCCCCGCGCCCCGGACGCCCTCGCTCCTCCCGTTCCCATCGCAACCCCCCTGCCGCTGCCTCGCCTCTGCCTCCTCCGACGACCGCTGTTCCGGCGCCAAACGCAGCGGCTGGGACTCCGTGCTGCACCAGTTCTCCGAGGTCGCCAAGCGAGTCGATTCCTACTGGAAGTCCCTCGGGAACGCCGCCGCTGACGATCGCGTCCGCGTCGTCGGTGGCGACGAGGATTGGGATTGGGATCGCTGGCGCCGGCATTTCGAGGAAATCGACGAGCAAGAGCGCCTCCTCTCGATTTTCAAGTCTCAGTTAAGCCGTGCCGTGTATTTGGAGAATTATGAAGATGCTGCCAGGCTTAAGGTTGCATTTGCAGCTACAGCTAACAACGACAGTGTTGGAAGAGTGATGTCTTATCTCAATAGAGCCATAAAAGAGGAGCGGTATGGTGATGCAGCTTTCTTAAGAGATAAAGCTGGCGCTGGACTTGTGGGTTGGTGGTCTGGTATTTCAGAAGGTGTAAATGATCCACATGGTCTAATTATTCGCATAACTCCTGAGCATGGAAGATATGTGGCGAGGAGTTATAGTCCAAGGCAACTTGCAACTTCTGCTGCTGGCATTCCTCTTTTTGAATTTTTTCTTACAATGGATAAAAAAGGTGAATTCAAGTCACAGGCTGTGTACTTAAAGCAAAGAGGGGCCTTCCATGGACCCCCAACAACCTCCTCTAAAACATTGGATGCTGCTGGGAGACTGAGTTCAGTGGAGTCTACTGAAGACAAAAGTGAGCTGTTTGTTGTGAGTACTGAAGATCCAGAAAATGGTAATGATAGGAATGATGGCTCTGATCCTGCTGAGGGAATGCCTGGATTTCAGAATGTCTTGAAAGATATGATTCCTGGGGTAAAGGTGAAGGTATTCAAGGTGATAACTCCAGAGAAAGTAGACAAGGATCTATCTAATGTGATTGAGAAGATAATTGAGGACGAAGACGGAGACGAAGACGAAGATGAAGAGATGGAAAATGATGCAGAAAGTCTAGAACTGGAAGAGATTAAGTCTGAGACTGACCAGGAGGGAGATGATGAGATTGAAATAAATGCTGGTCTGGGAACTTTTGAACGTGAAGACCAGAATGAGTTTGCTGTCAAAATTGCCATTGGTGGTCTTGTTCAGAAACTTTCTGGTAATCTATCCTCTAGAGATTTGCTTCGAGTCCCTGCTATGCTGGAGATGAAGGGGCGTGGTTCATTTTCCTTTACTGTTGAAAAAGAAGTCAATCAGCAGGTTGGTCTTGACAAAGGAAAATCTTCATCTGATAAATCAACTAAGTTTCAAGGTCGACGCAGAGTTGATCATGTTATTTTTGACCTTGCAAAATTCATTGGCAGGGGAAAGATACCCTCAAAGGTGCTGAAAGAAGTGGGAGAATTGATAAATCTCACTCTAAGTCAGGCTCAGAGCCATCACCAATTATCTGGCTCAACAATTTTCAATCGCATCGAAATACCAGCTTCGTTTGATCCTTTAAATGGTCTATACATTGGTGCACATGGGCTTTACTCCTCTGAAGTTATTCATCTAAGACGTAGATTTGGTCAGTGGCAAGAGGACAATGGGGCTAAGGAGCCTTCAAATATTGAGTTTTATGAGTATGTAGAAGCTTTGAAGCTAACTGGGGATCCTTATGTACCAGCTGGCCAGGTGGCATTTCGTGCAAAAATTGGAAAGAGGTATCAATTGCCTCATAAAGGGATAATACCTGAAGAGTTTGGCGTGATTGCTCGCTATAAAGGTGAAGGGAGGCTGGCTGAGCCAGGGTTTCAGAATGCCCGATGGGTTGATGGTGAGCTTGTGATTCTTGATGGGAAGCACCTAAAAGCAGGGCCGGTTGTTGGATTTGTGTATTGGGCCCCTGGGTATCATTTTTTGGTCTTCTTCAATCGGCTTAGGCTTCAACAGTAGGGTTTTGTTCATAATATCAGAGACTTGTAAATTCTTTCTTCAGATTCTCAGCGTTCTAGGTTTTGTTGAATGCTAAATTGTGCTTCAATGGAAGATATCACCAATCAATACAGGGTTTCCATTTGAGCTTTAAAAGATCTTCACTACTAGCTTTCTGCCGAGTAGCATAGGTTGAGCATTTGGCTGCTTGTCTAGAACTCAAATGACCGAGGTATCTTAAGCTTGGTAGCTGTAGCTTGACTAACTATAGATTGAAGAGGGATTCATAATATCAGCACTAAAGCACAATGTACTAGTCTCTTCATTCGACATTTTATGGAGGTGTAGTGTTCAGGGTATCTTCATCAACTTTGTACATTGTTCCTAATTTATAAGAAAAATTCCCATGTATCATAAAATTCATGATATCATCGTTCTTTCTGTTATGATGAAATTTTCATCACAATTGTCTTCTTACTTTGGATAGTATTTAGAGGTCTTTAGTATTAGCTTCCTCATTAACTCTATACAGTCAACAATTGAATCTCCCCCCAAAGTGTCAAGCCAAAATTTTGAATACAGATTTGATTTGATGACACCCGCAGTTGCCTTTTTTCAACCCCTGCATGACATACGGATGAGCTTGGGACTTGGGAGGAGTATGGCCAGCAAGTTCATCCCTTGACACATAATTAAACTTTCTTCGGGAAAGAGAAAATCTTGTGGGAATGAAAATTGGGGGAAAGTTCTTGTTTGGAAAACTGAAGATGTTGAGGAAAAG
>Glyma08g07220.2 sequence type=CDS gene model=Glyma08g07220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCCATCCCCTTCACTTCACATTCACAGCACACATCCTTCTTCTTCAACAACACACATATCCATTCTCTCTCATGGCTTCTTCTTCCATTTCCGCACCAACGCTCACCTTCCCGACGCAGAAGCTTGCCGTTCCGTTCCCCGCGCCCCGGACGCCCTCGCTCCTCCCGTTCCCATCGCAACCCCCCTGCCGCTGCCTCGCCTCTGCCTCCTCCGACGACCGCTGTTCCGGCGCCAAACGCAGCGGCTGGGACTCCGTGCTGCACCAGTTCTCCGAGGTCGCCAAGCGAGTCGATTCCTACTGGAAGTCCCTCGGGAACGCCGCCGCTGACGATCGCGTCCGCGTCGTCGGTGGCGACGAGGATTGGGATTGGGATCGCTGGCGCCGGCATTTCGAGGAAATCGACGAGCAAGAGCGCCTCCTCTCGATTTTCAAGTCTCAGTTAAGCCGTGCCGTGTATTTGGAGAATTATGAAGATGCTGCCAGGCTTAAGGTTGCATTTGCAGCTACAGCTAACAACGACAGTGTTGGAAGAGTGATGTCTTATCTCAATAGAGCCATAAAAGAGGAGCGGTATGGTGATGCAGCTTTCTTAAGAGATAAAGCTGGCGCTGGACTTGTGGGTTGGTGGTCTGGTATTTCAGAAGGTGTAAATGATCCACATGGTCTAATTATTCGCATAACTCCTGAGCATGGAAGATATGTGGCGAGGAGTTATAGTCCAAGGCAACTTGCAACTTCTGCTGCTGGCATTCCTCTTTTTGAATTTTTTCTTACAATGGATAAAAAAGGTGAATTCAAGTCACAGGCTGTGTACTTAAAGCAAAGAGGGGCCTTCCATGGACCCCCAACAACCTCCTCTAAAACATTGGATGCTGCTGGGAGACTGAGTTCAGTGGAGTCTACTGAAGACAAAAGTGAGCTGTTTGTTGTGAGTACTGAAGATCCAGAAAATGGTAATGATAGGAATGATGGCTCTGATCCTGCTGAGGGAATGCCTGGATTTCAGAATGTCTTGAAAGATATGATTCCTGGGGTAAAGGTGAAGGTATTCAAGGTGATAACTCCAGAGAAAGTAGACAAGGATCTATCTAATGTGATTGAGAAGATAATTGAGGACGAAGACGGAGACGAAGACGAAGATGAAGAGATGGAAAATGATGCAGAAAGTCTAGAACTGGAAGAGATTAAGTCTGAGACTGACCAGGAGGGAGATGATGAGATTGAAATAAATGCTGGTCTGGGAACTTTTGAACGTGAAGACCAGAATGAGTTTGCTGTCAAAATTGCCATTGGTGGTCTTGTTCAGAAACTTTCTGGTAATCTATCCTCTAGAGATTTGCTTCGAGTCCCTGCTATGCTGGAGATGAAGGGGCGTGGTTCATTTTCCTTTACTGTTGAAAAAGAAGTCAATCAGCAGGTTGGTCTTGACAAAGGAAAATCTTCATCTGATAAATCAACTAAGTTTCAAGGTCGACGCAGAGTTGATCATGTTATTTTTGACCTTGCAAAATTCATTGGCAGGGGAAAGATACCCTCAAAGGTGCTGAAAGAAGTGGGAGAATTGATAAATCTCACTCTAAGTCAGGCTCAGAGCCATCACCAATTATCTGGCTCAACAATTTTCAATCGCATCGAAATACCAGCTTCGTTTGATCCTTTAAATGGTCTATACATTGGTGCACATGGGCTTTACTCCTCTGAAGTTATTCATCTAAGACGTAGATTTGGTCAGTGGCAAGAGGACAATGGGGCTAAGGAGCCTTCAAATATTGAGTTTTATGAGTATGTAGAAGCTTTGAAGCTAACTGGGGATCCTTATGTACCAGCTGGCCAGGTGGCATTTCGTGCAAAAATTGGAAAGAGGTATCAATTGCCTCATAAAGGGATAATACCTGAAGAGTTTGGCGTGATTGCTCGCTATAAAGGTGAAGGGAGGCTGGCTGAGCCAGGGTTTCAGAATGCCCGATGGGTTGATGGTGAGCTTGTGATTCTTGATGGGAAGCACCTAAAAGCAGGGCCGGTTGTTGGATTTGTGTATTGGGCCCCTGGGTATCATTTTTTGGTCTTCTTCAATCGGCTTAGGCTTCAACAGTAG >Glyma08g07220.3 sequence type=CDS gene model=Glyma08g07220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCCATCCCCTTCACTTCACATTCACAGCACACATCCTTCTTCTTCAACAACACACATATCCATTCTCTCTCATGGCTTCTTCTTCCATTTCCGCACCAACGCTCACCTTCCCGACGCAGAAGCTTGCCGTTCCGTTCCCCGCGCCCCGGACGCCCTCGCTCCTCCCGTTCCCATCGCAACCCCCCTGCCGCTGCCTCGCCTCTGCCTCCTCCGACGACCGCTGTTCCGGCGCCAAACGCAGCGGCTGGGACTCCGTGCTGCACCAGTTCTCCGAGGTCGCCAAGCGAGTCGATTCCTACTGGAAGTCCCTCGGGAACGCCGCCGCTGACGATCGCGTCCGCGTCGTCGGTGGCGACGAGGATTGGGATTGGGATCGCTGGCGCCGGCATTTCGAGGAAATCGACGAGCAAGAGCGCCTCCTCTCGATTTTCAAGTCTCAGTTAAGCCGTGCCGTGTATTTGGAGAATTATGAAGATGCTGCCAGGCTTAAGGTTGCATTTGCAGCTACAGCTAACAACGACAGTGTTGGAAGAGTGATGTCTTATCTCAATAGAGCCATAAAAGAGGAGCGGTATGGTGATGCAGCTTTCTTAAGAGATAAAGCTGGCGCTGGACTTGTGGGTTGGTGGTCTGGTATTTCAGAAGGTGTAAATGATCCACATGGTCTAATTATTCGCATAACTCCTGAGCATGGAAGATATGTGGCGAGGAGTTATAGTCCAAGGCAACTTGCAACTTCTGCTGCTGGCATTCCTCTTTTTGAATTTTTTCTTACAATGGATAAAAAAGGTGAATTCAAGTCACAGGCTGTGTACTTAAAGCAAAGAGGGGCCTTCCATGGACCCCCAACAACCTCCTCTAAAACATTGGATGCTGCTGGGAGACTGAGTTCAGTGGAGTCTACTGAAGACAAAAGTGAGCTGTTTGTTGTGAGTACTGAAGATCCAGAAAATGGTAATGATAGGAATGATGGCTCTGATCCTGCTGAGGGAATGCCTGGATTTCAGAATGTCTTGAAAGATATGATTCCTGGGGTAAAGGTGAAGGTATTCAAGGTGATAACTCCAGAGAAAGTAGACAAGGATCTATCTAATGTGATTGAGAAGATAATTGAGGACGAAGACGGAGACGAAGACGAAGATGAAGAGATGGAAAATGATGCAGAAAGTCTAGAACTGGAAGAGATTAAGTCTGAGACTGACCAGGAGGGAGATGATGAGATTGAAATAAATGCTGGTCTGGGAACTTTTGAACGTGAAGACCAGAATGAGTTTGCTGTCAAAATTGCCATTGGTGGTCTTGTTCAGAAACTTTCTGGTAATCTATCCTCTAGAGATTTGCTTCGAGTCCCTGCTATGCTGGAGATGAAGGGGCGTGGTTCATTTTCCTTTACTGTTGAAAAAGAAGTCAATCAGCAGGTTGGTCTTGACAAAGGAAAATCTTCATCTGATAAATCAACTAAGTTTCAAGGTCGACGCAGAGTTGATCATGTTATTTTTGACCTTGCAAAATTCATTGGCAGGGGAAAGATACCCTCAAAGGTGCTGAAAGAAGTGGGAGAATTGATAAATCTCACTCTAAGTCAGGCTCAGAGCCATCACCAATTATCTGGCTCAACAATTTTCAATCGCATCGAAATACCAGCTTCGTTTGATCCTTTAAATGGTCTATACATTGGTGCACATGGGCTTTACTCCTCTGAAGTTATTCATCTAAGACGTAGATTTGGTCAGTGGCAAGAGGACAATGGGGCTAAGGAGCCTTCAAATATTGAGTTTTATGAGTATGTAGAAGCTTTGAAGCTAACTGGGGATCCTTATGTACCAGCTGGCCAGGTGGCATTTCGTGCAAAAATTGGAAAGAGGTATCAATTGCCTCATAAAGGGATAATACCTGAAGAGTTTGGCGTGATTGCTCGCTATAAAGGTGAAGGGAGGCTGGCTGAGCCAGGGTTTCAGAATGCCCGATGGGTTGATGGTGAGCTTGTGATTCTTGATGGGAAGCACCTAAAAGCAGGGCCGGTTGTTGGATTTGTGTATTGGGCCCCTGGGTATCATTTTTTGGTCTTCTTCAATCGGCTTAGGCTTCAACAGTAG
>Glyma08g07220.2 sequence type=predicted peptide gene model=Glyma08g07220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFHPLHFTFTAHILLLQQHTYPFSLMASSSISAPTLTFPTQKLAVPFPAPRTPSLLPFPSQPPCRCLASASSDDRCSGAKRSGWDSVLHQFSEVAKRVDSYWKSLGNAAADDRVRVVGGDEDWDWDRWRRHFEEIDEQERLLSIFKSQLSRAVYLENYEDAARLKVAFAATANNDSVGRVMSYLNRAIKEERYGDAAFLRDKAGAGLVGWWSGISEGVNDPHGLIIRITPEHGRYVARSYSPRQLATSAAGIPLFEFFLTMDKKGEFKSQAVYLKQRGAFHGPPTTSSKTLDAAGRLSSVESTEDKSELFVVSTEDPENGNDRNDGSDPAEGMPGFQNVLKDMIPGVKVKVFKVITPEKVDKDLSNVIEKIIEDEDGDEDEDEEMENDAESLELEEIKSETDQEGDDEIEINAGLGTFEREDQNEFAVKIAIGGLVQKLSGNLSSRDLLRVPAMLEMKGRGSFSFTVEKEVNQQVGLDKGKSSSDKSTKFQGRRRVDHVIFDLAKFIGRGKIPSKVLKEVGELINLTLSQAQSHHQLSGSTIFNRIEIPASFDPLNGLYIGAHGLYSSEVIHLRRRFGQWQEDNGAKEPSNIEFYEYVEALKLTGDPYVPAGQVAFRAKIGKRYQLPHKGIIPEEFGVIARYKGEGRLAEPGFQNARWVDGELVILDGKHLKAGPVVGFVYWAPGYHFLVFFNRLRLQQ* >Glyma08g07220.3 sequence type=predicted peptide gene model=Glyma08g07220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFHPLHFTFTAHILLLQQHTYPFSLMASSSISAPTLTFPTQKLAVPFPAPRTPSLLPFPSQPPCRCLASASSDDRCSGAKRSGWDSVLHQFSEVAKRVDSYWKSLGNAAADDRVRVVGGDEDWDWDRWRRHFEEIDEQERLLSIFKSQLSRAVYLENYEDAARLKVAFAATANNDSVGRVMSYLNRAIKEERYGDAAFLRDKAGAGLVGWWSGISEGVNDPHGLIIRITPEHGRYVARSYSPRQLATSAAGIPLFEFFLTMDKKGEFKSQAVYLKQRGAFHGPPTTSSKTLDAAGRLSSVESTEDKSELFVVSTEDPENGNDRNDGSDPAEGMPGFQNVLKDMIPGVKVKVFKVITPEKVDKDLSNVIEKIIEDEDGDEDEDEEMENDAESLELEEIKSETDQEGDDEIEINAGLGTFEREDQNEFAVKIAIGGLVQKLSGNLSSRDLLRVPAMLEMKGRGSFSFTVEKEVNQQVGLDKGKSSSDKSTKFQGRRRVDHVIFDLAKFIGRGKIPSKVLKEVGELINLTLSQAQSHHQLSGSTIFNRIEIPASFDPLNGLYIGAHGLYSSEVIHLRRRFGQWQEDNGAKEPSNIEFYEYVEALKLTGDPYVPAGQVAFRAKIGKRYQLPHKGIIPEEFGVIARYKGEGRLAEPGFQNARWVDGELVILDGKHLKAGPVVGFVYWAPGYHFLVFFNRLRLQQ*
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