Glyma08g07200 - SoyBase

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Report for Sequence Feature Glyma08g07200

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5173109
stop:	5175939
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g07200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64380	AT	Annotation by Michelle Graham. TAIR10: Inositol monophosphatase family protein \| chr5:25741342-25743024 FORWARD LENGTH=404	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0042578	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoric ester hydrolase activity	SoyBase	N/A	ISS
KOG1458	KOG	Fructose-1,6-bisphosphatase	JGI		ISS
PTHR11556	Panther	FRUCTOSE-1,6-BISPHOSPHATASE-RELATED	JGI		ISS
PTHR11556:SF7	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00316	PFAM	Fructose-1-6-bisphosphatase	JGI		ISS
UniRef100_G7JV43	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fructose-1,6-bisphosphatase class n=1 Tax=Medicago truncatula RepID=G7JV43_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KQY1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQY1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g07200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07200

Paralog	Evidence	Comments
Glyma07g30110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g067500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g07200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g07200

Limit To All Plant Sequences

>Glyma08g07200.1   sequence type=CDS   gene model=Glyma08g07200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGTCAACAGCAGCACCACCACTCTATCAACTTGTGAGCTTCAAGCCAAAGCTTCAAACTTTCCCTTCAAAATCTCAACTTTGCCCCTTAGGGACCCCTTTCTGCAGACTAGAAATGGCTTCAATTTCTGGGTTTGGGCTGAAACCCCTGAGGGCTGTGAGTGTTTCTTCTTCATCTTCTGCATCAAGTGATGATGGATTTGTCACACTGACAGAGTATGTGGGGAAGGAAGGAATGAATGTGAAAGATGATTTGGTGGTGTTGCTTGATCATATTCAGTATGCTTGCAAGAAAATTGCAGCACTTGTGGCTTCTCCTTTCAATTACAGCCTTGGCAAACAAACTGCTCTTGGTTCTGTTGGTTCTGATAGGGATGCTCCAAAGCCTCTTGATATTGTCTCGAATGAAATTATCTTGTCATCACTCCGAAAATCCGGAAGAGTTGCTGTCATGGCTTCAGAAGAAAATGACGCACCGACTTGGATAAGTGACGATGGTCCATATGTGGTTGTAACAGATCCCCTAGATGGTTCTCGAAATATTGATGCATCCATTCCAACAGGCACGATTTTTGGTATTTATAAGCGCCTTGAGGAACTAGATGATCTACCCACAGAGGACAAAGCTATGCTGAATTCACTCCAGAGTGGAAGTAGGCTGATTGCTGCTGCTTATGTTCTCTATTCTTCTGCAACTATACTCTGCATCACCTTTGGTTCTGGAACACAGGCATTCACTCTTGATCATTCAACAGGAGACTTTATTCTCACAAATCCAAGCATCAAAATTCCTCCCCGTGGTCAAATTTATTCAGTAAATGATGCACGATATTTTGACTGGCCTGAAGGTTTAAGGCAATATATAGACACTGTTAGACAAGGGAAAGGTAGATACCCCAAGAAGTACTCAGCCAGGTATATATGTTCTCTGGTGGCAGATCTCCACAGGACTTTGTTGTATGGTGGTGTGGCAATGAATCCAAGGGACCATCTTCGTCTTGTTTATGAAGCAAACCCTCTTAGTTTCATTGTAGAGCAGGCTGGTGGGAGAGGGTCTGATGGCAAAAATAGGATTCTTTCCCTTCAACCAGTTAAACTTCACCAAAGACTTCCTCTATTTTTGGGAAGCTTGGAAGACATGGAAGAGTTAGAAAGTTATGGGGATATCCAACAAAAAGTTAATCCTGGTTATGAGGTTTGA

Predicted protein sequences of Glyma08g07200

Limit To All Plant Sequences

>Glyma08g07200.1   sequence type=predicted peptide   gene model=Glyma08g07200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSTAAPPLYQLVSFKPKLQTFPSKSQLCPLGTPFCRLEMASISGFGLKPLRAVSVSSSSSASSDDGFVTLTEYVGKEGMNVKDDLVVLLDHIQYACKKIAALVASPFNYSLGKQTALGSVGSDRDAPKPLDIVSNEIILSSLRKSGRVAVMASEENDAPTWISDDGPYVVVTDPLDGSRNIDASIPTGTIFGIYKRLEELDDLPTEDKAMLNSLQSGSRLIAAAYVLYSSATILCITFGSGTQAFTLDHSTGDFILTNPSIKIPPRGQIYSVNDARYFDWPEGLRQYIDTVRQGKGRYPKKYSARYICSLVADLHRTLLYGGVAMNPRDHLRLVYEANPLSFIVEQAGGRGSDGKNRILSLQPVKLHQRLPLFLGSLEDMEELESYGDIQQKVNPGYEV*

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