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Report for Sequence Feature Glyma08g07180

Feature Type:gene_model
Chromosome:Gm08
Start:5163326
stop:5165184
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g07180
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G33640AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16159727-16160211 REVERSE LENGTH=95 SoyBaseE_val: 2.00E-41ISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0007033GO-bp Annotation by Michelle Graham. GO Biological Process: vacuole organization SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR22739Panther STRIATED MUSCLE ACTIVATOR OF RHO-DEPENDENT SIGNALING-RELATED JGI ISS
UniRef100_A2XKU9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Costars family protein n=2 Tax=Oryza sativa RepID=COSA_ORYSI SoyBaseE_val: 2.00E-42ISS
UniRef100_I1KQX7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQX7_SOYBN SoyBaseE_val: 6.00E-59ISS

Expression Patterns of Glyma08g07180
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07180
ParalogEvidenceComments
Glyma07g30130 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07180 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g067300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g07180
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g07180
>Glyma08g07180.1   sequence type=CDS   gene model=Glyma08g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGTTGAAGAAGAGGTTCAGCGTCTCAGCCAAGAAATCAAGAGGCTTGGTAAGGTCCAAGCAGATGGTTCTTACAAGGTAACATTTGGAACACTATTTAACGATGATGAATGCGCAAATATATTTGAAGCACTTGTTGGAACACTAAGAGCAGCGAAAAAGCGTAAAGTACTGACATACGAGGGTGAGCTACTGCTGCAAGGAGTCCATGATAATGTGGAAATCACTCTTAATCCTGCCCCTGCTGAAGCAGCCGCAGCAGCTGCCAACTGA
Predicted protein sequences of Glyma08g07180
>Glyma08g07180.1   sequence type=predicted peptide   gene model=Glyma08g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNVEEEVQRLSQEIKRLGKVQADGSYKVTFGTLFNDDECANIFEALVGTLRAAKKRKVLTYEGELLLQGVHDNVEITLNPAPAEAAAAAAN*






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