Glyma08g07170 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g07170

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5156192
stop:	5161740
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g07170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G21175	AT	Annotation by Michelle Graham. TAIR10: ZIM-like 1 \| chr3:7422832-7424598 FORWARD LENGTH=297	SoyBase	E_val: 1.00E-63	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF00320	PFAM	GATA zinc finger	JGI		ISS
PF06200	PFAM	tify domain	JGI		ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_G7JV51	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GATA transcription factor n=1 Tax=Medicago truncatula RepID=G7JV51_MEDTR	SoyBase	E_val: 8.00E-155	ISS
UniRef100_I1KQX6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQX6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g07170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07170

Paralog	Evidence	Comments
Glyma07g30140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g067200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g07170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g07170

Limit To All Plant Sequences

>Glyma08g07170.1   sequence type=CDS   gene model=Glyma08g07170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAACAGCACCCTGAACAATCCCGGCGACAACGCCGAAGACCCGCCACCGCCGCCGGCTCCCATGCAAGTCTTTGATTCCTTCCAACCGTTCCATTACGCCAACGGTTCCGATGAAGGAGAAGAAGCTGTTCCTGCTCCAGTCGCCAATGCTTCTTCTGCTATGCGCGCCAGAGCTAGCGAACTCACCATTTCCTTCGAAGGCGAAGTCTATGTTTTCCCAGCCGTTACGCCCGAAAAGGTGCAGGCTGTATTATTACTCTTGGGAGCACAGGAGATGCCAAATAGTGCCCCCACCTCTGACTTTTTGTTGCAGCAAAACTATCAGGACATTCGGGAAATAAATGATCCTTCCCGAAGTTCAAAGCTTTCAAGAAGATTTGCATCACTTGTTAGGTTTCGTGAAAAACGAAAGGAGAGATGTTTTGAGAAGAAAATTCGGTACTCTTGCCGTAAAGAGGTTGCTCAGAGGATGCATCGTAAGAATGGACAGTTTGCATCATTGAAGGAAGACTACAAATCTCCTGCTGAAAATTGGGATTCAAGCAATGGTACTCCTTGCCCAGACTCTACTGAGCGTAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCAGCAGGTCCAAGATCTCTGTGCAATGCCTGTGGGCTCATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGGAAGGATTGCTTTTGAACAAAATGAACTGGATACTTCAGCTGATATAAAGCCTTCAACAACAGAAGCCAAACATTCTTATGCTAAGCAGGGCAAGGAGGGAAGCCCTGAAGAAACTAAGCCTGTGCAAATGGATTCCAGACGGTCACCTGAGAAGACAAATGAGCAGTTTATTATTGGAACTGCTGAATCAGTTACTAACAACTTGTCCGTCCGATTGGAGAATCATGCTCTTATTCTACATGAGCAGGATACTCTTGAGGATCTTGCTGATGCTTCTGGGACCGAATTTGAGATTCCTGCAGGTTTTGATGATCAGGTTGACATTGATGATGCCAATATGAGGACTTATTGGCTGTGA

Predicted protein sequences of Glyma08g07170

Limit To All Plant Sequences

>Glyma08g07170.1   sequence type=predicted peptide   gene model=Glyma08g07170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNSTLNNPGDNAEDPPPPPAPMQVFDSFQPFHYANGSDEGEEAVPAPVANASSAMRARASELTISFEGEVYVFPAVTPEKVQAVLLLLGAQEMPNSAPTSDFLLQQNYQDIREINDPSRSSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASLKEDYKSPAENWDSSNGTPCPDSTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGRIAFEQNELDTSADIKPSTTEAKHSYAKQGKEGSPEETKPVQMDSRRSPEKTNEQFIIGTAESVTNNLSVRLENHALILHEQDTLEDLADASGTEFEIPAGFDDQVDIDDANMRTYWL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain