Glyma08g07160 - SoyBase

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Report for Sequence Feature Glyma08g07160

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5144624
stop:	5154205
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g07160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33650	AT	Annotation by Michelle Graham. TAIR10: dynamin-related protein 3A \| chr4:16161073-16166587 FORWARD LENGTH=808	SoyBase	E_val: 0	ISS
GO:0000266	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial fission	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0009791	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic development	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009933	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem structural organization	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0010182	GO-bp	Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0016559	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome fission	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0019915	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid storage	SoyBase	N/A	ISS
GO:0044375	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of peroxisome size	SoyBase	N/A	ISS
GO:0050826	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to freezing	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
GO:0035091	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
KOG0446	KOG	Vacuolar sorting protein VPS1, dynamin, and related proteins	JGI		ISS
PTHR11566	Panther	DYNAMIN	JGI		ISS
PTHR11566:SF12	Panther	DYNAMIN	JGI		ISS
PF00350	PFAM	Dynamin family	JGI		ISS
PF01031	PFAM	Dynamin central region	JGI		ISS
PF02212	PFAM	Dynamin GTPase effector domain	JGI		ISS
UniRef100_B9T3E4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dynamin, putative n=1 Tax=Ricinus communis RepID=B9T3E4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KQX5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQX5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g07160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07160

Paralog	Evidence	Comments
Glyma07g30150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g067100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g07160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g07160

Limit To All Plant Sequences

>Glyma08g07160.1   sequence type=CDS   gene model=Glyma08g07160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTGGCGGGCGGCGCCGCTCCTCTCGGCTCGTCGGTGATCTCGCTGGTGAACCGGCTCCAGGACATCTTCAGTCGCGTGGGGAGCCACTCCGCCATCGACCTCCCTCAGGTTGCGGTGGTCGGCAGCCAGAGCAGCGGCAAGTCCAGCGTCCTCGAAGCCCTCGTCGGCCGTGACTTCCTCCCTCGCGGCAACGACATCTGCACGCGCCGCCCCCTCGTCCTCCAGCTCGTCCAAACCAAACCCCCTTCTCAGGATGAGTTCGGCGAGTTCCTCCACTTGCCTGGCCGCAAGTTCCACGACTTCTCCCAAATTCGCGCCGAAATTCAGGTTGAGACTGATAGGGAAGCTGGAGGGAACAAAGGTGTGTCTGATAAACAGATTCGTTTGAAGATTTTTTCGCCGAATGTTCTCGACATTACGCTCGTGGATCTCCCTGGCATCACCAAGGTTCCCGTTGGCGACCAGCCTTCGGATATCGAGGCTCGAATCAGAACCATGATCATGTCTTACATCAAAACTCCAACCTGTGTCATTCTCGCTGTGACGCCGGCGAATTCGGATTTGGCGAACTCGGATGCTCTTCAGATGGCTGGAATTGCCGATCCTGATGGGAACAGAACGATTGGTGTCATCACGAAGTTGGATATCATGGATAGAGGCACTGATGCGCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTCGGTGTTGTGAATCGTAGTCAAGAGGATATTCTAATGAACCGAAGTATAAAGGATGCTCTTGTTGCTGAAGAGAAGTTTTTCCGCACTCATCCTATATACAGTGGCCTAGCAGATAGTTGCGGTGTTCCTCAATTGGCAAAGAAGTTGAACAAGATTCTTGCACAACACATCAAGTCTGTGTTACCAGGGCTGAGAGCACGTATAAGCGCTTCACTAGTCACTATTGCAAAGGAACATGCAAGCTATGGAGAAATCACAGAGTCCAAGGCTGGACAGGGTGCTCTTCTCCTTAATATTCTTTCAAAATACTGTGATGCATTCTCCTCCATGGTAGAGGGAAAGAATGAGGAGATGTCTACATCTGAGCTGTCTGGGGGTGCAAGAATTCATTACATTTTTCAATCCATCTTTGTGAAGAGCTTAGAGGAGGTGGATCCATGCGAAGATTTGACTGATGATGATATTCGCACAGCCATACAGAATGCAACTGGACCTAAATCAGCACTGTTTGTTCCTGAAGTCCCGTTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCAAGTCTTCAGTGCGCTAGGTTTATATATGACGAGTTAATGAAAATCAGCCATCACTGTATGGTCACTGAATTGCAGCGGTTCCCTTTCTTGAGAAAGCGCATGGATGAAGTTATTGGGAACTTTTTACGAGAAGGCCTAGAACCCTCGGAGACTATGATAACACACGTCATAGAAATGGAGATGGACTACATCAACACTTCCCACCCAAATTTTATTGGTGGAAGTAAGGCAATAGAAGCTGCAGTGCAACAAACCAGGTCTTCTAGAGTTGGTTTACCAGTTTCTAGGGTGAAGGATGCACTGGAATCTGATAAGGGACCAGCTACTGAGAGAAGTGGGAAGTCTCGATCTATTCTTGCAAGACATGCAAATGGAGTAGTGGCTGATCAGGGTGTTCGTGCTACATCAGATGTTGAAAAAGTAGTGACCTCTGGAAACACAGGTGGATCAAGTTGGGGGATCTCATCCATTTTCGGTGGAGGTGATAACCGTGTGTCTGTGAAGGAAATGACAGCTAGTAAACCACATACTACTGAACCAATGCATAATGTGCAGTCATTCTCTACAATTCATTTGAGAGAGCCCCCTTCTGTCTTGAGACCATTGGAGAGCAATTCAGAGACCGAAGCTGTTGAAATCACAGTAACAAAGTTGCTTTTGAAATCATACTATGACATTGTCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTGGTAAATAACACAAAGAGAGAGCTTCACAATGTCTTCATTGAAAAACTATACAGAGAGGATCTGTTTGAAGAGATGTTGCAAGAACCTGAAGAGGTAGCCAAGAAAAGAAAAAACTGTCGAGAACTGCTCCGAGCTTATCAACAGGCTTTTAAAGACTTGAACGAACTGCCTCTTGAAGCTGAAACAGTTGAAAGGGGATACAGTTTGCCTGAAATTACTACCGGCTTACCTAAAATTCGTGGATTGCCAACTTCATCTATGTATTCTACTAGCAGTTCGGGAGACTATTATGAAGCTTCTCCCAAGAACACAAAGTCTAAAAATAAAAAGTCTTCACATTCTGGGGAACTCCAATCTCCATTTCAGGATTCAAACGGAAATGGAGGGCCATACACGTCAGGTTATCCAATGGCTGGTGAATGA

Predicted protein sequences of Glyma08g07160

Limit To All Plant Sequences

>Glyma08g07160.1   sequence type=predicted peptide   gene model=Glyma08g07160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVAGGAAPLGSSVISLVNRLQDIFSRVGSHSAIDLPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLVQTKPPSQDEFGEFLHLPGRKFHDFSQIRAEIQVETDREAGGNKGVSDKQIRLKIFSPNVLDITLVDLPGITKVPVGDQPSDIEARIRTMIMSYIKTPTCVILAVTPANSDLANSDALQMAGIADPDGNRTIGVITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDILMNRSIKDALVAEEKFFRTHPIYSGLADSCGVPQLAKKLNKILAQHIKSVLPGLRARISASLVTIAKEHASYGEITESKAGQGALLLNILSKYCDAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPEVPFEVLVRRQISRLLDPSLQCARFIYDELMKISHHCMVTELQRFPFLRKRMDEVIGNFLREGLEPSETMITHVIEMEMDYINTSHPNFIGGSKAIEAAVQQTRSSRVGLPVSRVKDALESDKGPATERSGKSRSILARHANGVVADQGVRATSDVEKVVTSGNTGGSSWGISSIFGGGDNRVSVKEMTASKPHTTEPMHNVQSFSTIHLREPPSVLRPLESNSETEAVEITVTKLLLKSYYDIVRKNVEDLVPKAIMHFLVNNTKRELHNVFIEKLYREDLFEEMLQEPEEVAKKRKNCRELLRAYQQAFKDLNELPLEAETVERGYSLPEITTGLPKIRGLPTSSMYSTSSSGDYYEASPKNTKSKNKKSSHSGELQSPFQDSNGNGGPYTSGYPMAGE*

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