Report for Sequence Feature Glyma08g07150
Feature Type: gene_model
Chromosome: Gm08
Start: 5139359
stop: 5142694
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g07150
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G09570 AT
Annotation by Michelle Graham. TAIR10: Cox19-like CHCH family protein | chr5:2970733-2971970 FORWARD LENGTH=139
SoyBase E_val: 2.00E-51 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0016036 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation
SoyBase N/A ISS
GO:0019375 GO-bp
Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process
SoyBase N/A ISS
GO:0045892 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG4090
KOG
Uncharacterized conserved protein
JGI ISS
PTHR13523 Panther
COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77
JGI ISS
PTHR13523:SF2 Panther
gb def: agcp9078 [anopheles gambiae str. pest]
JGI ISS
PF06747 PFAM
CHCH domain
JGI ISS
UniRef100_B6TKB9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: p8MTCP1 n=1 Tax=Zea mays RepID=B6TKB9_MAIZE
SoyBase E_val: 9.00E-41 ISS
UniRef100_C6T0M8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T0M8_SOYBN
SoyBase E_val: 9.00E-96 ISS
Expression Patterns of Glyma08g07150
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g07150
Paralog Evidence Comments
Glyma07g30160 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g07150 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g067000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g07150
Transcripts of Glyma08g07150
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g07150.2 sequence type=transcript gene model=Glyma08g07150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CGCGACACGTGTCTCATCGACTTCAAAGGATTTTAGGGTTTAAATTGGTCATTACGCTTCGAATATAGTATATGCCGTAAACCTCTGCGCTCTCTCTCTCTGTCTCCTACGATTCGTTTTGCCCCTTTTGTTGCCCTAATTTCAACCATGCCTCGCCGTAGCTCCGATGGAAGATCTGCCCGTCCTGCTCCTCGGGCAGCTCCTCGTCCTGCTCCAGTTCACCATGCTCCTCCTCCAGCCCCTGCTCAGAGTGGTGGTGGATCTATGCTTGGTGGCATTGGTTCAACCATAGCTCAAGGTATGGCTTTTGGCACCGGAAGTGCAGTGGCACACAGGGCTGTGGATGCAGTCATGGGTCCTCGTACCATTCAACATGAAACAGTTGTTACAGAGGCTGCTGCTGCTGCCCCTGCACCCACTGCAAATACTTTTGGTGGCGATGCATGCAGCATTCATACAAAGGCATTCCAGGATTGCCTGAACGGCTATGGGAATGACATTAGCAAGTGCCAGTTTTACATGGATATGCTTGCAGAATGCAGAAAGAACTCTGGAGCCACGTTGAGCATGTAACTGCTACATTTGCCTGTTTTGGAGTTTGCATCAGTGCCCTGTCTCCTATGGTTTGAACTGTTAATGTGGCTAGGTATTGCATTTGAATAAAATACCATTTGCCCGAAGATGCATACAAACTAATATAAAGTCATTTTCAATTGTTACTTTATTATTTGATACCTATAATTGGTAACGTATTTGATCTGAATATTTCGGCTGTTTGGATTATATACCATTTTCCTCTGTTTTTTTGGCTCATTTACATCTGCTGTTCGGATTTGCTTGAATTGTTGGGGAAAGCGTTCCCTGCATCAACCCTCCCCCCTTGGATTGGTTGTGAAAAATGCATAT
Coding sequences of Glyma08g07150
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g07150.1 sequence type=CDS gene model=Glyma08g07150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCTCGCCGTAGCTCCGGTGGAAGATCTGCCCGTCCTGCTCCTCGGGCAGCTCCTCGTCCTGCTCCAGTTCACCATGCTCCTCCTCCAGCCCCTGCTCAGAGTGGTGGTGGATCTATGCTTGGTGGCATTGGTTCAACCATAGCTCAAGGTATGGCTTTTGGCACCGGAAGTGCAGTGGCACACAGGGCTGTGGATGCAGTCATGGGTCCTCGTACCATTCAACATGAAACAGTTGTTACAGAGGCTGCTGCTGCTGCCCCTGCACCCACTGCAAATACTTTTGGTGGCGATGCATGCAGCATTCATACAAAGGCATTCCAGGATTGCCTGAACGGCTATGGGAATGACATTAGCAAGTGCCAGTTTTACATGGATATGCTTGCAGAATGCAGAAAGAACTCTGGAGCCACGTTGAGCATGTAA
>Glyma08g07150.2 sequence type=CDS gene model=Glyma08g07150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCTCGCCGTAGCTCCGATGGAAGATCTGCCCGTCCTGCTCCTCGGGCAGCTCCTCGTCCTGCTCCAGTTCACCATGCTCCTCCTCCAGCCCCTGCTCAGAGTGGTGGTGGATCTATGCTTGGTGGCATTGGTTCAACCATAGCTCAAGGTATGGCTTTTGGCACCGGAAGTGCAGTGGCACACAGGGCTGTGGATGCAGTCATGGGTCCTCGTACCATTCAACATGAAACAGTTGTTACAGAGGCTGCTGCTGCTGCCCCTGCACCCACTGCAAATACTTTTGGTGGCGATGCATGCAGCATTCATACAAAGGCATTCCAGGATTGCCTGAACGGCTATGGGAATGACATTAGCAAGTGCCAGTTTTACATGGATATGCTTGCAGAATGCAGAAAGAACTCTGGAGCCACGTTGAGCATGTAA
Predicted protein sequences of Glyma08g07150
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g07150.1 sequence type=predicted peptide gene model=Glyma08g07150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPRRSSGGRSARPAPRAAPRPAPVHHAPPPAPAQSGGGSMLGGIGSTIAQGMAFGTGSAVAHRAVDAVMGPRTIQHETVVTEAAAAAPAPTANTFGGDACSIHTKAFQDCLNGYGNDISKCQFYMDMLAECRKNSGATLSM*
>Glyma08g07150.2 sequence type=predicted peptide gene model=Glyma08g07150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPRRSSDGRSARPAPRAAPRPAPVHHAPPPAPAQSGGGSMLGGIGSTIAQGMAFGTGSAVAHRAVDAVMGPRTIQHETVVTEAAAAAPAPTANTFGGDACSIHTKAFQDCLNGYGNDISKCQFYMDMLAECRKNSGATLSM*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
