SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g07140

Feature Type:gene_model
Chromosome:Gm08
Start:5125139
stop:5128258
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g07140
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G23970AT Annotation by Michelle Graham. TAIR10: Class I glutamine amidotransferase-like superfamily protein | chr2:10199698-10201081 FORWARD LENGTH=251 SoyBaseE_val: 6.00E-87ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
KOG3179 KOG Predicted glutamine synthetase JGI ISS
PTHR11922Panther GMP SYNTHASE-RELATED JGI ISS
PTHR11922:SF11Panther SUBFAMILY NOT NAMED JGI ISS
PF00117PFAM Glutamine amidotransferase class-I JGI ISS
UniRef100_G7K286UniRef Annotation by Michelle Graham. Most informative UniRef hit: GMP synthase n=1 Tax=Medicago truncatula RepID=G7K286_MEDTR SoyBaseE_val: 2.00E-130ISS
UniRef100_I1KQX3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQX3_SOYBN SoyBaseE_val: 8.00E-179ISS

Expression Patterns of Glyma08g07140
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07140
ParalogEvidenceComments
Glyma07g30170 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07140 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g066900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g07140
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g07140
>Glyma08g07140.1   sequence type=CDS   gene model=Glyma08g07140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGAAGAGATTTGGTGTGTTGATGTGCGCAGAGGATTCAGAGTACGTGAAGAAAGTGTACGGAGGATATTCTGGAGTTTTCGTGAGAATGCTGGCGGAGGAGGGAGAGACATGGGACGTGTACAAGGTGGCGTGTGGGGATTTTCCTGATGAAGATGACTTGGGTCTCTATGATGGCTTTGTGATCACTGGGAGTTGCAGTGATGCACATGGCAACGACACATGGGTGAATGATCTCCTCAACTTGCTCCGCAAACTCGATTCCATGAACAAGAAAATCCTCGGAATTTGCTTCGGCCACCAGATACTTGGGCGTGCATTGGGAGGGAAGGTGACTCGTTCTCCTACTGGATGGGACCTTGGTGTCAGAACCATAACACTGTCACCATCTTTGCCATTTGCTTTGATTTCTCTTGATCTTCCATCAAGGCTTTCCATTATCGAATGCCACAGGGATGAGATCCGAGAGCTACCTGCCAAGGCAGAGGTGATTGCTTGGTCGGATAAGACTGGAATTGAAATGTTTAGGTATGGAGATCACATTATGGGAATCCAAGGTCACCCTGAGTACTCCAAAGACATTCTTTTTCACCTTATTGATCGTCTCATTCAACGCAATTACATCATAGATGCTTTCGGTAAGCAAGCAAGGGACAGGGCTGCATTGTGGGAGCCAGATAGGGAAGCTTGGAAGAAACTCTGTGTCACTTTTTTGAAGGGTCGATTGTGA
Predicted protein sequences of Glyma08g07140
>Glyma08g07140.1   sequence type=predicted peptide   gene model=Glyma08g07140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKKRFGVLMCAEDSEYVKKVYGGYSGVFVRMLAEEGETWDVYKVACGDFPDEDDLGLYDGFVITGSCSDAHGNDTWVNDLLNLLRKLDSMNKKILGICFGHQILGRALGGKVTRSPTGWDLGVRTITLSPSLPFALISLDLPSRLSIIECHRDEIRELPAKAEVIAWSDKTGIEMFRYGDHIMGIQGHPEYSKDILFHLIDRLIQRNYIIDAFGKQARDRAALWEPDREAWKKLCVTFLKGRL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo