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Report for Sequence Feature Glyma08g07130

Feature Type:gene_model
Chromosome:Gm08
Start:5114458
stop:5116052
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G17050AT Annotation by Michelle Graham. TAIR10: UDP-glucosyl transferase 78D2 | chr5:5607828-5609392 REVERSE LENGTH=460 SoyBaseE_val: 3.00E-133ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009718GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009813GO-bp Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0008194GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
GO:0016758GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups SoyBaseN/AISS
GO:0035251GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity SoyBaseN/AISS
GO:0047213GO-mf Annotation by Michelle Graham. GO Molecular Function: anthocyanidin 3-O-glucosyltransferase activity SoyBaseN/AISS
GO:0080043GO-mf Annotation by Michelle Graham. GO Molecular Function: quercetin 3-O-glucosyltransferase activity SoyBaseN/AISS
KOG1192 KOG UDP-glucuronosyl and UDP-glucosyl transferase JGI ISS
PTHR11926Panther GLUCOSYL/GLUCURONOSYL TRANSFERASES JGI ISS
PTHR11926:SF15Panther UDP-GLUCURONOSYLTRANSFERASE RELATED JGI ISS
PF00201PFAM UDP-glucoronosyl and UDP-glucosyl transferase JGI ISS
UniRef100_G0WMC8UniRef Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucose:flavonoid 3-O-glucosyltransferase n=1 Tax=Glycine max RepID=G0WMC8_SOYBN SoyBaseE_val: 0ISS
UniRef100_G0WMC8UniRef Annotation by Michelle Graham. Best UniRef hit: UDP-glucose:flavonoid 3-O-glucosyltransferase n=1 Tax=Glycine max RepID=G0WMC8_SOYBN SoyBaseE_val: 0ISS

LocusGene SymbolProtein Name
UF3GT UDP-glucose:flavonoid 3-O-glucosyltransferase
UGT78K2-1 UDP-glucose:flavonoid 3-O-glucosyltransferase gene 1

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma07g30180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g066800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g07130.1   sequence type=CDS   gene model=Glyma08g07130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCATCAAAACAAACACGTAGCAGTCTTTGCTTTCCCCTTTGGCAGCCACCTTATGCCTCTCTTAAACCTTGTCCTCAAACTAGCTCATTCCCTTCCAAATTGTTCATTCTCATTCATTGGCACAGACAAATCCAATGCAATCCTTTTCCCAAAACCCCACATCCCAAATAACATCAAGGCCTATAGCATAAGCGATGGAATCCCAGAGGGTCACGTCCTAGGCAAAAACCCAACTGAAAAGTTGAATCTTTTTCTCCAAACTGGTCCTGAGAACTTGCACAAAGGTATAGAACTTGCGGAAGCAGAGACAAAGAAGAGAGTCACATGCATCGTTGCAGATGCTTTTGTAACCTCTTCTCTCTTTGTGGCTCAGACCCTCAATGTTCCTTGGATTGCACTTTGGCTTCCCAATTCATGCTCACTCTCTCTATATTTCTACACTGAATTGATACGTCAGCACTGTGCAAACCATGCTGGGAACACAACCTTGGATTTCCTTCCCGGGTTGTCGAAGCTGCGTGTTGAAGACATGCCACAGGATCTGCTCGATGTGGGAGAAAAAGAAACAGTTTTTGCAAGGGAACTAAATTCACTAGGTAAGGTGCTACCTCAAGCTAAGGTAGTAGTTATGAATTTCTTTGAGGAGTTGGAGCCACCTTTGTTTGTTCAAGACATGAGATCCAAGTTGCAATCTTTGCTTTATGTTGTTCCACTTCCTTCCACGTTATTGCCACCATCTGACACAGATTCAAGTGGATGCTTGTCATGGTTGGATACGAAGAATTCTAAATCAGTGGCTTATGTTTGCTTTGGGACTGTGGTGGCACCTCCTCCACACGAGCTTGTGGCAGTGGCAGAGGCACTCGAAGAAAGTGGATTTCCATTTCTTTGGTCACTGAAGGAAGGTCTAATTGGTCTTTTGCCAAATGGATTTGTTGAGAGAACCAAAAAGCATGGGAAAATAGTGTCTTGGGCTCCACAGACACAAGTTTTGGCACATGATTCTGTAGGAGTCTTTGTGACTCACTGTGGAGCTAACTCTGTTATTGAGAGTGTTTCCAGTGGTGTTCCTATGATCTGCAAGCCATTCTTTGGGGATCAAGTTGTGGCTGCAAGAGTGATAGAAGATGTTTGGGAGATTGGTGTCATAATGGAAGGTAAGGTGTTCACAAAAAATGGATTGGTGAAAAGCTTGGATTTGATTTTGGTGCATCAAGAGGGGAAGAAGATTAGAGACAATGCTCTTAAGGTGAAGAAGACTGTGGAAGATGCAGGTAGGCCTGAGGGGCAAGCTGCACAGGATTTCGACACTCTGGTGGAAGTAATTTCTAGATCTTAA

>Glyma08g07130.1   sequence type=predicted peptide   gene model=Glyma08g07130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDHQNKHVAVFAFPFGSHLMPLLNLVLKLAHSLPNCSFSFIGTDKSNAILFPKPHIPNNIKAYSISDGIPEGHVLGKNPTEKLNLFLQTGPENLHKGIELAEAETKKRVTCIVADAFVTSSLFVAQTLNVPWIALWLPNSCSLSLYFYTELIRQHCANHAGNTTLDFLPGLSKLRVEDMPQDLLDVGEKETVFARELNSLGKVLPQAKVVVMNFFEELEPPLFVQDMRSKLQSLLYVVPLPSTLLPPSDTDSSGCLSWLDTKNSKSVAYVCFGTVVAPPPHELVAVAEALEESGFPFLWSLKEGLIGLLPNGFVERTKKHGKIVSWAPQTQVLAHDSVGVFVTHCGANSVIESVSSGVPMICKPFFGDQVVAARVIEDVWEIGVIMEGKVFTKNGLVKSLDLILVHQEGKKIRDNALKVKKTVEDAGRPEGQAAQDFDTLVEVISRS*







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