SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G74520 | AT | Annotation by Michelle Graham. TAIR10: HVA22 homologue A | chr1:28008109-28009156 REVERSE LENGTH=177 | SoyBase | E_val: 9.00E-30 | ISS |
| GO:0009269 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to desiccation | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1726 | KOG | HVA22/DP1 gene product-related proteins | JGI | ISS | |
| PTHR12300 | Panther | HVA22-LIKE PROTEINS | JGI | ISS | |
| PTHR12300:SF11 | Panther | HVA22-LIKE PROTEIN | JGI | ISS | |
| PF03134 | PFAM | TB2/DP1, HVA22 family | JGI | ISS | |
| UniRef100_G7JV28 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: HVA22-like protein a n=1 Tax=Medicago truncatula RepID=G7JV28_MEDTR | SoyBase | E_val: 3.00E-113 | ISS |
| UniRef100_I1KQX1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQX1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g07120 not represented in the dataset |
Glyma08g07120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g066700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g07120.1 sequence type=CDS gene model=Glyma08g07120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTTCTCTCTGGTTCCTTAAACTGTCCCTCAAATGCCTTGATCACCTCGCATGGCCTCTTCTTGCTTTGGGGTATCCTCTATGTGCTTCCGTACAAGCAATTGAGACTGATTCCAATAAAGAAACTAGGGATTTGATCTCGTATTGGATACTTCTCTCGTTAATATACCTCTTTGAGTATGCATTTTCGAGGATTCTTCAATGGTTCCAGTTTTGGCCTTACATTAAGCTTATGATCATCTTCTGCCTTGTCACGCCAGACTTTGGACGAGCTTCTTATGCCTATAATAACCTTATCCGCACTTGCATCTCCTTAAATCCACAAGCAATCATATGTAGGTTAAATAACTGGAGGAAGTTTTTTGTCAAGAAAGATGACTTTTTACTGCATGTAGAGAGATATCTAAACGAGAATGGAACTGAAGCCTTAGAGAAACTCATTGCTAGCAAGAACACCAACCTATTGAAGAACACAACTTATAAACCTGATGCAGAAGCAACAAATGCAATTATAGCAACTGATAATAATGAAACGCAACAGACAAATGAGACAAAACTCCAAACACAGCAAAAAACCATCAAAGATTTGGAGGTGATTGAGAAAAAAGAAATTCTTGCAGGCAAGCAAGATATTTCTGTTGTGCCTAACCTTGTGCCAAGTCAGAATGCTTCACCAGCCATGGTGGAAACTAAAATATTAGTGGGGAAAGACACAGCTAGTGGAGAGCTTCCCGAGAGTTCTACACATAAGGAAGTGCAGAAAGAGTGGACATGCGCTTTATGTCATGTAACGACATCTAGCGAGAAAACCTTGATTGACCACCTTCATGGGAGGAAACACAAGGCAACTTGTGAATCTCTGAAAGCACAAAATCAACCTGTGCCACATAAGGTGAAAAGTGATCAGTCCAAAGATGATTTGAAGCAAAAGAACGTTATCTATCAGATAAATTCCAAGACCAAGAGTGGAGAGAAGGTAGGAAAAGAAGCCATGGACCATAAGGTGCAGAAACTGCAAAAGAAACTATATGAACCTGCTGGGACGAGTAATTCCAAATTTCTGTGTGAAGTCTGTAATGTCTATTGCCCTTGCGAGATTGCTTTGGCCTCACACAAAAATGGGAAGAAGCATTTGGCTAAAATTAAAACTTCAATCTGA
>Glyma08g07120.1 sequence type=predicted peptide gene model=Glyma08g07120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSLWFLKLSLKCLDHLAWPLLALGYPLCASVQAIETDSNKETRDLISYWILLSLIYLFEYAFSRILQWFQFWPYIKLMIIFCLVTPDFGRASYAYNNLIRTCISLNPQAIICRLNNWRKFFVKKDDFLLHVERYLNENGTEALEKLIASKNTNLLKNTTYKPDAEATNAIIATDNNETQQTNETKLQTQQKTIKDLEVIEKKEILAGKQDISVVPNLVPSQNASPAMVETKILVGKDTASGELPESSTHKEVQKEWTCALCHVTTSSEKTLIDHLHGRKHKATCESLKAQNQPVPHKVKSDQSKDDLKQKNVIYQINSKTKSGEKVGKEAMDHKVQKLQKKLYEPAGTSNSKFLCEVCNVYCPCEIALASHKNGKKHLAKIKTSI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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