Glyma08g07100 - SoyBase

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Report for Sequence Feature Glyma08g07100

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5094973
stop:	5096225
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g07100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18265	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF593 \| chr1:6282338-6283180 REVERSE LENGTH=280	SoyBase	E_val: 1.00E-15	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04576	PFAM	Protein of unknown function, DUF593	JGI		ISS
UniRef100_A8W458	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DUF593-2 protein n=1 Tax=Lotus japonicus RepID=A8W458_LOTJA	SoyBase	E_val: 3.00E-109	ISS
UniRef100_UPI0002338E3A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338E3A related cluster n=1 Tax=unknown RepID=UPI0002338E3A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g07100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g07100

Paralog	Evidence	Comments
Glyma07g30231	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g07100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g066500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g07100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g07100

Limit To All Plant Sequences

>Glyma08g07100.2   sequence type=CDS   gene model=Glyma08g07100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGACCACTCCCTCCCTTCTCTTGCATCAGAGGCTGCCCATGGATTTCCCTCCCGCCTTCAATCTCCTCACCGAATTCGGTTGCGGCTTCGTCCTTCTCCGCTCCCTCTCGCGCATTTTCAATCTTCTAGGCCTCTTTCTCATGCTCACCTTCTGCTTCAAGCTTCTGCGCTTCGGCTGGAACACCAAGGGCTCCATTCGCTTCCTCTGCGACTCCGGCGGCATCCCCAAACTCCGCTTCTGCCTCGATAACGTCGCTCGGGAAAAAGTCTCCAAAGCAAAGACCAAACCTTTGAAAAAACCGCGCCACCCAACTTCGAGCTCTTCCTTCCGGAGGCGGCCCAATGAGTCCGGGGAGAGAGGCAACGCGGTTTCGGATGATGGGTCGGAGGGAAAGGTAGAGAACGAGAGAGAGGGTTGCAATGAGGACGAGGTGTTCGACGTAATGACGCTGAGAAGAATCGTGAGGATGGAGCGGCAGAAGGCCAATGCGGCGTGCGCAGACCTCGAGAAGGAGAGGACGGCGGCTTCCTCATCTGCGGAGGAGGCGATGGCGATGATCCTGCGGCTGCAGAGCGAGAAGAGCGCGGCAGAGATTCAGGCAACGCAGTTCCGGCGGATGGCGGAGCAGAAGCTGGATTACGACCAGGAGGTGATTGAGTCGTTGCAGTGGACGATCACGCAGCACGAGTTTCAGAAGTGTGAGGTGGAGGATCGGATAGGGATGTGTAAGGAGGAGCTGAGGCAGTTTATGAGAGATGATGAAATAGAGCGAATTGAAGATGAAGTGAGTAGGTGTTTTATGTGTGATAATGATAATGATGATCCTGATGGTAATTCAGTAGGTAGCTCTCCCGAAACCGAATCACAGACCTTGTAA

Predicted protein sequences of Glyma08g07100

Limit To All Plant Sequences

>Glyma08g07100.2   sequence type=predicted peptide   gene model=Glyma08g07100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQTTPSLLLHQRLPMDFPPAFNLLTEFGCGFVLLRSLSRIFNLLGLFLMLTFCFKLLRFGWNTKGSIRFLCDSGGIPKLRFCLDNVAREKVSKAKTKPLKKPRHPTSSSSFRRRPNESGERGNAVSDDGSEGKVENEREGCNEDEVFDVMTLRRIVRMERQKANAACADLEKERTAASSSAEEAMAMILRLQSEKSAAEIQATQFRRMAEQKLDYDQEVIESLQWTITQHEFQKCEVEDRIGMCKEELRQFMRDDEIERIEDEVSRCFMCDNDNDDPDGNSVGSSPETESQTL*

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