Glyma08g07001 - SoyBase

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Report for Sequence Feature Glyma08g07001

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5028101
stop:	5034061
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g07001

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37940	AT	Annotation by Michelle Graham. TAIR10: AGAMOUS-like 21 \| chr4:17835695-17838621 REVERSE LENGTH=228	SoyBase	E_val: 2.00E-87	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009556	GO-bp	Annotation by Michelle Graham. GO Biological Process: microsporogenesis	SoyBase	N/A	ISS
GO:0009691	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin biosynthetic process	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0052543	GO-bp	Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008134	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription factor binding	SoyBase	N/A	ISS
KOG0014	KOG	MADS box transcription factor	JGI		ISS
PTHR11945	Panther	MADS BOX PROTEIN	JGI		ISS
PTHR11945:SF96	Panther	AGL21 (AGAMOUS-LIKE 21), TRANSCRIPTION FACTOR	JGI		ISS
PF00319	PFAM	SRF-type transcription factor (DNA-binding and dimerisation domain)	JGI		ISS
PF01486	PFAM	K-box region	JGI		ISS
UniRef100_B9RX62	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mads box protein, putative n=1 Tax=Ricinus communis RepID=B9RX62_RICCO	SoyBase	E_val: 4.00E-106	ISS
UniRef100_UPI0002338E33	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338E33 related cluster n=1 Tax=unknown RepID=UPI0002338E33	SoyBase	E_val: 6.00E-160	ISS

Expression Patterns of Glyma08g07001

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g07001 not represented in the dataset	Glyma08g07001 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g07001 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g065400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g07001

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g07001

Limit To All Plant Sequences

>Glyma08g07001.2   sequence type=transcript   gene model=Glyma08g07001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCGTCTTGAGACCTACAAAAACCACTTTTCGCCTTCCCTATAAAGCTCTAAAATAGCAGCATCGCTTTCTTCTTCTAGCTCCATCTTCCAGTTATCCTTTTTCAGTTCCATAATTTTCAAATGGGGAGAGGAAAGATCGTGATTCGAAGGATTGACAATTCCACTAGCCGGCAAGTGACGTTTTCCAAGAGAAGAAATGGGTTAGTGAAGAAAGCTAGAGAGCTATCTATTCTGTGTGATGCAGAAGTTGGATTGATTGTGTTCTCCAGCACTGGCAAGCTTTATGACTATGCAAGCACCAGCATGAAATCTGTTATTGAGCGCTATAACAAGGTCAAAGAAGACCATCAACAGTTAATAAATCCTGCATCAGAAGTCAAGCTTTGGCAGAGAGAAGTAGCAAGCTTGCGGCAACAAGTGCAGTACATGCAAGAATGTCACAGGCAAATGATGGGCCAAGAGCTTTCTGGATTGGGTATCGAAGAGTTAGGAAATCTGGAAAAGCGACTGGAGATGAGTTTAAAGGGTGTTCGCATGAAGAAGGATCAAATTCTGATTGATGAGGTCAAAGAACTACACCAAAAGGGAAGCCTTGCTCATCAAGAAAATGTAGAACTTAATAGAAAGATAAATCTCATCCGCAAGGAAAATGAAGAACTACAAAAGGTTATTGAAGCTAAGTGTAGAAAAGGTGTTGCAGCATCCAATCCTCCATTCACTATCAACTATGGATGTAATATGCTTGCTCCTATCAGTCTCCAGCTAAGCCTGCCAGAGTCAACGTAGTAAGCCATCAGCCAAAGCAATGAAATTGGGATATTCCCTCAAACTATAACTATTGCCTAGGTCTATAAATATGTTTAAGGTCCTTATTAATATACTAAATTTTGGTTTTAGACTATCTAAAACTTGGTTTTATTTTGTGCTTTCTGATTTTTT

Coding sequences of Glyma08g07001

Limit To All Plant Sequences

>Glyma08g07001.1   sequence type=CDS   gene model=Glyma08g07001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGAGGAAAGATCGTGATTCGAAGGATTGACAATTCCACTAGCCGGCAAGTGACGTTTTCCAAGAGAAGAAATGGGTTAGTGAAGAAAGCTAGAGAGCTATCTATTCTGTGTGATGCAGAAGTTGGATTGATTGTGTTCTCCAGCACTGGCAAGCTTTATGACTATGCAAGCACCAGCATGAAATCTGTTATTGAGCGCTATAACAAGGTCAAAGAAGACCATCAACAGTTAATAAATCCTGCATCAGAAGTCAAGCTTTGGCAGAGAGAAGTAGCAAGCTTGCGGCAACAAGTGCAGTACATGCAAGAATGTCACAGGCAAATGATGGGCCAAGAGCTTTCTGGATTGGGTATCGAAGAGTTAGGAAATCTGGAAAAGCGACTGGAGATGAGTTTAAAGGGTGTTCGCATGAAGAAGGATCAAATTCTGATTGATGAGGTCAAAGAACTACACCAAAAGGGAAGCCTTGCTCATCAAGAAAATGTAGAACTTAATAGAAAGATAAATCTCATCCGCAAGGAAAATGAAGAACTACAAAAGGTTATTGAAGCTAAGTGTAGAAAAGGTGTTGCAGCATCCAATCCTCCATTCACTATCAACTATGGATGTAATATGCTTGCTCCTATCAGTCTCCAGCTAAGCCTGCCAGAGTCAACGTAG

>Glyma08g07001.2   sequence type=CDS   gene model=Glyma08g07001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGAGGAAAGATCGTGATTCGAAGGATTGACAATTCCACTAGCCGGCAAGTGACGTTTTCCAAGAGAAGAAATGGGTTAGTGAAGAAAGCTAGAGAGCTATCTATTCTGTGTGATGCAGAAGTTGGATTGATTGTGTTCTCCAGCACTGGCAAGCTTTATGACTATGCAAGCACCAGCATGAAATCTGTTATTGAGCGCTATAACAAGGTCAAAGAAGACCATCAACAGTTAATAAATCCTGCATCAGAAGTCAAGCTTTGGCAGAGAGAAGTAGCAAGCTTGCGGCAACAAGTGCAGTACATGCAAGAATGTCACAGGCAAATGATGGGCCAAGAGCTTTCTGGATTGGGTATCGAAGAGTTAGGAAATCTGGAAAAGCGACTGGAGATGAGTTTAAAGGGTGTTCGCATGAAGAAGGATCAAATTCTGATTGATGAGGTCAAAGAACTACACCAAAAGGGAAGCCTTGCTCATCAAGAAAATGTAGAACTTAATAGAAAGATAAATCTCATCCGCAAGGAAAATGAAGAACTACAAAAGGTTATTGAAGCTAAGTGTAGAAAAGGTGTTGCAGCATCCAATCCTCCATTCACTATCAACTATGGATGTAATATGCTTGCTCCTATCAGTCTCCAGCTAAGCCTGCCAGAGTCAACGTAG

Predicted protein sequences of Glyma08g07001

Limit To All Plant Sequences

>Glyma08g07001.1   sequence type=predicted peptide   gene model=Glyma08g07001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGKIVIRRIDNSTSRQVTFSKRRNGLVKKARELSILCDAEVGLIVFSSTGKLYDYASTSMKSVIERYNKVKEDHQQLINPASEVKLWQREVASLRQQVQYMQECHRQMMGQELSGLGIEELGNLEKRLEMSLKGVRMKKDQILIDEVKELHQKGSLAHQENVELNRKINLIRKENEELQKVIEAKCRKGVAASNPPFTINYGCNMLAPISLQLSLPEST*

>Glyma08g07001.2   sequence type=predicted peptide   gene model=Glyma08g07001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGKIVIRRIDNSTSRQVTFSKRRNGLVKKARELSILCDAEVGLIVFSSTGKLYDYASTSMKSVIERYNKVKEDHQQLINPASEVKLWQREVASLRQQVQYMQECHRQMMGQELSGLGIEELGNLEKRLEMSLKGVRMKKDQILIDEVKELHQKGSLAHQENVELNRKINLIRKENEELQKVIEAKCRKGVAASNPPFTINYGCNMLAPISLQLSLPEST*

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