Glyma08g06970 - SoyBase

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Report for Sequence Feature Glyma08g06970

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4992300
stop:	4996120
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09580	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53345.1); Has 53 Blast hits to 53 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). \| chr5:2972639-2974438 FORWARD LENGTH=393	SoyBase	E_val: 2.00E-127	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_B7F8U1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: cDNA, clone: J065166P19, full insert sequence n=2 Tax=Oryza sativa RepID=B7F8U1_ORYSJ	SoyBase	E_val: 2.00E-89	ISS
UniRef100_UPI0002338E31	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338E31 related cluster n=1 Tax=unknown RepID=UPI0002338E31	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g06970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06970

Paralog	Evidence	Comments
Glyma07g30270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g065200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g06970

Limit To All Plant Sequences

>Glyma08g06970.3   sequence type=transcript   gene model=Glyma08g06970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTTCCTTTTCTGGAGCATTCTCTGCTCTCTTTGCTCACCTCTTCTACACTCACCACAATCTCCCTTCCCTCATATTACCCTTCTCTTCGGTTCCCCTTCTCGCTCTCAGGGTTGAAGATTTGTGCTTTGAAGGCCTGGAGACGTGTTATCTACTTGACTTTATTCCTCCGAAGGAATTCCTTTTCGACCTTTCTCGTAAATCAAAATGCAAGATTGTTGGGTTTGATCATCGGAAATCGGTACTTGGACATATTCCCCCTGCCAATGATTGCCCTGAGAATATTATGATTAATGTAAATCTTGAGAAGAGTAGCTCCAGTGTTGTTTATGAGTACTTTGCCGGCAAATGTGAGGATGCTAATATTTCTAATGGTGAGGCTCCATGTTTGGTGGACTCAAAAGACAAAGGCCGAGTGGAGTTGATGCTTAAGTACATTGAGGATGGAGATCTTCGCCGATGGAGCTTGCCTGGCATTAGGGCCTTTAATATTGGACTGAGTGAATGGCGGTCAAGGTTTAACTGCATTTCTAATCCATACATGTACAAGCAGTTGCTGAAATTAAGTGCTGAAGATTTAATTACTAAAGGAAATTCATGTGTGTCATCTCGCCAGAATGCTGCAAGCAAATTGCTGGAAAAGGCTTTCAGGGTTCGACTGGGTAGAGGATTTTATGGAGAGTGCCTGGGAGTTCGGGCAGATGGGAACTCCAACTTAAGTGATGAAATCGGCAAGCTTCTTAGTGTAAAAAGTGCTGCTACTGGTCTTAGGCAGGATCTTGGCTCGTTGCTTGATGAGGAAGAATGCAGATGCATAGCACTAATCACATGCCAATAGGGGCTGTGATATTCATGCAACGGAATAATCTCAAAATGTGCTTGCGTAGCACTGATAGTTCCACTGATACCTCTGAAGTTGCAAAGGCTTATGGAGGAGGTGGTTCCCCAAGTTCTAGCTCCTTCATAATAAGGTTGGATGAATATAACCAATGGATTTCAGGAAGAGACAGATGAGGTGATGACACTTGCATTTCCCAAATGATATCCAAGGTGATGGCAGTGTTATCATAACAGATCCATAGACTGTGCTGATGTTGATGCAGCACATGATGAGACTAGGAAAAATAAGGTGAAGCCTGAGCAACATGGAAGCATTGATCTTGGGAGTAAACACGCCACTGTTGGAGTTGACTTTAAGGACATAAGTTGAAGATGATATTCAAGTTTAGCCAATTAAAAAGAAAAATTCATGAAAATTAAATTCTGGTGAGTTTCTGGCAATGTTTCTTCAACCACCAGTTGGCAACTTTACAGCTTTTAGCTGCAGTTTCTGATTACTATTGCAATTTTTATCCTTTTCAGCCTAAATCTATGATTAAAAATATTTATGAAGCATTAATAAATAAGTTCAGTAACTTTTGCTTT

>Glyma08g06970.4   sequence type=transcript   gene model=Glyma08g06970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTTCCTTTTCTGGAGCATTCTCTGCTCTCTTTGCTCACCTCTTCTACACTCACCACAATCTCCCTTCCCTCATATTACCCTTCTCTTCGGTTCCCCTTCTCGCTCTCAGGGTTGAAGATTTGTGCTTTGAAGGCCTGGAGACGTGTTATCTACTTGACTTTATTCCTCCGAAGGAATTCCTTTTCGACCTTTCTCGTAAATCAAAATGCAAGATTGTTGGGTTTGATCATCGGAAATCGGTACTTGGACATATTCCCCCTGCCAATGATTGCCCTGAGAATATTATGATTAATGTAAATCTTGAGAAGAGTAGCTCCAGTGTTGTTTATGAGTACTTTGCCGGCAAATGTGAGGATGCTAATATTTCTAATGGTGAGGCTCCATGTTTGGTGGACTCAAAAGACAAAGGCCGAGTGGAGTTGATGCTTAAGTACATTGAGGATGGAGATCTTCGCCGATGGAGCTTGCCTGGCATTAGGGCCTTTAATATTGGACTGAGTGAATGGCGGTCAAGGTTTAACTGCATTTCTAATCCATACATGTACAAGCAGTTGCTGAAATTAAGTGCTGAAGATTTAATTACTAAAGGAAATTCATGTGTGTCATCTCGCCAGAATGCTGCAAGCAAATTGCTGGAAAAGGCTTTCAGGGTTCGACTGGGTAGAGGATTTTATGGAGAGTGCCTGGGAGTTCGGGCAGATGGGAACTCCAACTTAAGTGATGAAATCGGCAAGCTTCTTAGTGTAAAAAGTGCTGCTACTGGTCTTAGGATCTTGGCTCGTTGCTTGATGAGGAAGAATGCAGATGCATAGCACTAATCACATGTTAGTTATGCCATCATATAATATCAACATGAAATTTTATATATATACACATACAAGAGACTTTATTATCTTGAAGAAAAGCATTCGGTGCTTGATTATTGCTTGGACTAGATATGTTGATTCTTCGTCTGATTGTAGCTGTCAGAGAGTCCAGAATTATGTCTTGACTTGAGTATCCTTGTTTGATGAAGGTTCTTAGGGGTTAAGTGAAGAATCTAAAAAATGTACTTATATCAGATTATTTTATAACCATGATATCCTGCCACGACCTTTTGTGGGGTTTTTAATTGTATCAAAGAATTATTGAATTATATAATCTGATGGATTAGATTTATTCACCAATGACAGGCCAATAGGGGCTGTGATATTCATGCAACGGAATAATCTCAAAATGTGCTTGCGTAGCACTGATAGTTCCACTGATACCTCTGAAGTTGCAAAGGCTTATGGAGGAGGTGGTTCCCCAAGTTCTAGCTCCTTCATAATAAGGTTGGATGAATATAACCAATGGATTTCAGGAAGAGACAGATGAGGTGATGACACTTGCATTTCCCAAATGATATCCAAGGTGATGGCAGTGTTATCATAACAGATCCATAGACTGTGCTGATGTTGATGCAGCACATGATGAGACTAGGAAAAATAAGGTGAAGCCTGAGCAACATGGAAGCATTGATCTTGGGAGTAAACACGCCACTGTTGGAGTTGACTTTAAGGACATAAGTTGAAGATGATATTCAAGTTTAGCCAATTAAAAAGAAAAATTCATGAAAATTAAATTCTGGTGAGTTTCTGGCAATGTTTCTTCAACCACCAGTTGGCAACTTTACAGCTTTTAGCTGCAGTTTCTGATTACTATTGCAATTTTTATCCTTTTCAGCCTAAATCTATGATTAAAAATATTTATGAAGCATTAATAAATAAGTTCAGTAACTTTTGCTTT

Coding sequences of Glyma08g06970

Limit To All Plant Sequences

>Glyma08g06970.2   sequence type=CDS   gene model=Glyma08g06970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTTCCTTTTCTGGAGCATTCTCTGCTCTCTTTGCTCACCTCTTCTACACTCACCACAATCTCCCTTCCCTCATATTACCCTTCTCTTCGGTTCCCCTTCTCGCTCTCAGGGTTGAAGATTTGTGCTTTGAAGGCCTGGAGACGTGTTATCTACTTGACTTTATTCCTCCGAAGGAATTCCTTTTCGACCTTTCTCGTAAATCAAAATGCAAGATTGTTGGGTTTGATCATCGGAAATCGGTACTTGGACATATTCCCCCTGCCAATGATTGCCCTGAGAATATTATGATTAATGTAAATCTTGAGAAGAGTAGCTCCAGTGTTGTTTATGAGTACTTTGCCGGCAAATGTGAGGATGCTAATATTTCTAATGGTGAGGCTCCATGTTTGGTGGACTCAAAAGACAAAGGCCGAGTGGAGTTGATGCTTAAGTACATTGAGGATGGAGATCTTCGCCGATGGAGCTTGCCTGGCATTAGGGCCTTTAATATTGGACTGAGTGAATGGCGGTCAAGGTTTAACTGCATTTCTAATCCATACATGTACAAGCAGTTGCTGAAATTAAGTGCTGAAGATTTAATTACTAAAGGAAATTCATGTGTGTCATCTCGCCAGAATGCTGCAAGCAAATTGCTGGAAAAGGCTTTCAGGGTTCGACTGGGTAGAGGATTTTATGGAGAGTGCCTGGGAGTTCGGGCAGATGGGAACTCCAACTTAAGTGATGAAATCGGCAAGCTTCTTAGTGTAAAAAGTGCTGCTACTGGTCTTAGGCCAATAGGGGCTGTGATATTCATGCAACGGAATAATCTCAAAATGTGCTTGCGTAGCACTGATAGTTCCACTGATACCTCTGAAGTTGCAAAGGCTTATGGAGGAGGTGGTTCCCCAAGTTCTAGCTCCTTCATAATAAGGTTGGATGAATATAACCAATGGATTTCAGGAAGAGACAGATGA

>Glyma08g06970.3   sequence type=CDS   gene model=Glyma08g06970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTTCCTTTTCTGGAGCATTCTCTGCTCTCTTTGCTCACCTCTTCTACACTCACCACAATCTCCCTTCCCTCATATTACCCTTCTCTTCGGTTCCCCTTCTCGCTCTCAGGGTTGAAGATTTGTGCTTTGAAGGCCTGGAGACGTGTTATCTACTTGACTTTATTCCTCCGAAGGAATTCCTTTTCGACCTTTCTCGTAAATCAAAATGCAAGATTGTTGGGTTTGATCATCGGAAATCGGTACTTGGACATATTCCCCCTGCCAATGATTGCCCTGAGAATATTATGATTAATGTAAATCTTGAGAAGAGTAGCTCCAGTGTTGTTTATGAGTACTTTGCCGGCAAATGTGAGGATGCTAATATTTCTAATGGTGAGGCTCCATGTTTGGTGGACTCAAAAGACAAAGGCCGAGTGGAGTTGATGCTTAAGTACATTGAGGATGGAGATCTTCGCCGATGGAGCTTGCCTGGCATTAGGGCCTTTAATATTGGACTGAGTGAATGGCGGTCAAGGTTTAACTGCATTTCTAATCCATACATGTACAAGCAGTTGCTGAAATTAAGTGCTGAAGATTTAATTACTAAAGGAAATTCATGTGTGTCATCTCGCCAGAATGCTGCAAGCAAATTGCTGGAAAAGGCTTTCAGGGTTCGACTGGGTAGAGGATTTTATGGAGAGTGCCTGGGAGTTCGGGCAGATGGGAACTCCAACTTAAGTGATGAAATCGGCAAGCTTCTTAGTGTAAAAAGTGCTGCTACTGGTCTTAGGCAGGATCTTGGCTCGTTGCTTGATGAGGAAGAATGCAGATGCATAGCACTAATCACATGCCAATAG

>Glyma08g06970.4   sequence type=CDS   gene model=Glyma08g06970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTTCCTTTTCTGGAGCATTCTCTGCTCTCTTTGCTCACCTCTTCTACACTCACCACAATCTCCCTTCCCTCATATTACCCTTCTCTTCGGTTCCCCTTCTCGCTCTCAGGGTTGAAGATTTGTGCTTTGAAGGCCTGGAGACGTGTTATCTACTTGACTTTATTCCTCCGAAGGAATTCCTTTTCGACCTTTCTCGTAAATCAAAATGCAAGATTGTTGGGTTTGATCATCGGAAATCGGTACTTGGACATATTCCCCCTGCCAATGATTGCCCTGAGAATATTATGATTAATGTAAATCTTGAGAAGAGTAGCTCCAGTGTTGTTTATGAGTACTTTGCCGGCAAATGTGAGGATGCTAATATTTCTAATGGTGAGGCTCCATGTTTGGTGGACTCAAAAGACAAAGGCCGAGTGGAGTTGATGCTTAAGTACATTGAGGATGGAGATCTTCGCCGATGGAGCTTGCCTGGCATTAGGGCCTTTAATATTGGACTGAGTGAATGGCGGTCAAGGTTTAACTGCATTTCTAATCCATACATGTACAAGCAGTTGCTGAAATTAAGTGCTGAAGATTTAATTACTAAAGGAAATTCATGTGTGTCATCTCGCCAGAATGCTGCAAGCAAATTGCTGGAAAAGGCTTTCAGGGTTCGACTGGGTAGAGGATTTTATGGAGAGTGCCTGGGAGTTCGGGCAGATGGGAACTCCAACTTAAGTGATGAAATCGGCAAGCTTCTTAGTGTAAAAAGTGCTGCTACTGGTCTTAGGATCTTGGCTCGTTGCTTGATGAGGAAGAATGCAGATGCATAG

Predicted protein sequences of Glyma08g06970

Limit To All Plant Sequences

>Glyma08g06970.2   sequence type=predicted peptide   gene model=Glyma08g06970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
PSFSGAFSALFAHLFYTHHNLPSLILPFSSVPLLALRVEDLCFEGLETCYLLDFIPPKEFLFDLSRKSKCKIVGFDHRKSVLGHIPPANDCPENIMINVNLEKSSSSVVYEYFAGKCEDANISNGEAPCLVDSKDKGRVELMLKYIEDGDLRRWSLPGIRAFNIGLSEWRSRFNCISNPYMYKQLLKLSAEDLITKGNSCVSSRQNAASKLLEKAFRVRLGRGFYGECLGVRADGNSNLSDEIGKLLSVKSAATGLRPIGAVIFMQRNNLKMCLRSTDSSTDTSEVAKAYGGGGSPSSSSFIIRLDEYNQWISGRDR*

>Glyma08g06970.3   sequence type=predicted peptide   gene model=Glyma08g06970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
PSFSGAFSALFAHLFYTHHNLPSLILPFSSVPLLALRVEDLCFEGLETCYLLDFIPPKEFLFDLSRKSKCKIVGFDHRKSVLGHIPPANDCPENIMINVNLEKSSSSVVYEYFAGKCEDANISNGEAPCLVDSKDKGRVELMLKYIEDGDLRRWSLPGIRAFNIGLSEWRSRFNCISNPYMYKQLLKLSAEDLITKGNSCVSSRQNAASKLLEKAFRVRLGRGFYGECLGVRADGNSNLSDEIGKLLSVKSAATGLRQDLGSLLDEEECRCIALITCQ*

>Glyma08g06970.4   sequence type=predicted peptide   gene model=Glyma08g06970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
PSFSGAFSALFAHLFYTHHNLPSLILPFSSVPLLALRVEDLCFEGLETCYLLDFIPPKEFLFDLSRKSKCKIVGFDHRKSVLGHIPPANDCPENIMINVNLEKSSSSVVYEYFAGKCEDANISNGEAPCLVDSKDKGRVELMLKYIEDGDLRRWSLPGIRAFNIGLSEWRSRFNCISNPYMYKQLLKLSAEDLITKGNSCVSSRQNAASKLLEKAFRVRLGRGFYGECLGVRADGNSNLSDEIGKLLSVKSAATGLRILARCLMRKNADA*

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