SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G09590 | AT | Annotation by Michelle Graham. TAIR10: mitochondrial HSO70 2 | chr5:2975721-2978508 FORWARD LENGTH=682 | SoyBase | E_val: 0 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009615 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to virus | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005759 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial matrix | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0051082 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding | SoyBase | N/A | ISS |
| KOG0102 | KOG | Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily | JGI | ISS | |
| PTHR19375 | Panther | HEAT SHOCK PROTEIN 70KDA | JGI | ISS | |
| PTHR19375:SF1 | Panther | HEAT SHOCK PROTEIN 70-RELATED | JGI | ISS | |
| PF00012 | PFAM | Hsp70 protein | JGI | ISS | |
| UniRef100_I1KQV7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KQV7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q01899 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Heat shock 70 kDa protein, mitochondrial n=1 Tax=Phaseolus vulgaris RepID=HSP7M_PHAVU | SoyBase | E_val: 0 | ISS |
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Glyma08g06950 not represented in the dataset |
Glyma08g06950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g30290 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g065100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g06950.2 sequence type=transcript gene model=Glyma08g06950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGATACTTTCTTTAGAGAAAAGTATACTATACGAATACGAATACGATACCTTCATTTCCACCTCTCACGACCATCACTTCTTTCGTCAGCACAAAACCCTAAACCCTAATTTAAAGCCAAACCCTCCCATTCAGGCATTTCTCCAACGCCCAATTCCAAAGCCCTTGTTTCACTTTTTCCAATCCGATATGGCCGCCGCGACCGCCTTGCTCCGCTCTCTCCGCCGCCGCGACCTTCCCTCGTCTTCTCTCTCCGCCTTTCGTTCGTTGACGAGTGGCACAAAGACATCATATGTAGGGAACAAGTGGGCAAGTTTGTCTCGGCCGTTCAGTTCAAAGCCTGCTGGTAATGATGTCATTGGAATTGATCTGGGTACTACCAATTCATGTGTTTCTGTTATGGAGGGAAAGGTAAGATTTCCTCTCTCTTAATTTGTTACGAATTTTTCAGTGGTGTCTGTGCTGACTAATATTTATTACATTTTCAGAATCCCAAAGTTATTGAGAATTCTGAAGGAGCTCGAACAACACCATCAGTGGTTGCCTTCAACCAGAAAGCGGAGCTTCTTGTTGGTACACCAGCCAAGCGTCAGGCTGTGACAAACCCAACAAACACTCTTTTTGGAACCAAGCGTTTGATAGGTAGGCGTTTTGATGATTCTCAAACTCAGAAGGAGATGAAAATGGTTCCATACAAGATTGTTAAGGCTCCCAATGGAGATGCTTGGGTTGAAGCCAATGGGCAGCAGTATTCTCCCAGCCAAGTTGGTGCTTTTGTTCTCACCAAGATGAAGGAAACTGCTGAGTCATATCTTGGAAAGTCAGTTTCAAAAGCTGTAATTACTGTACCAGCTTACTTCAATGATGCTCAGAGACAGGCAACAAAAGATGCCGGTAGAATTGCTGGTCTTGATGTTCAAAGAATCATCAATGAGCCCACTGCTGCTGCACTTTCATATGGGATGAACAACAAGGAGGGTCTCATTGCAGTTTTTGATCTTGGAGGTGGAACATTTGATGTGTCCATCTTAGAGATTTCTAATGGTGTTTTTGAGGTGAAAGCCACAAATGGTGACACGTTCTTGGGAGGAGAGGATTTTGATAATGCTTTATTGGATTTTCTAGTGAATGAATTCAAAAGAACTGAGAATATTGATCTTTCAAAGGATAAACTTGCATTGCAGAGGCTTCGAGAAGCTGCTGAGAAAGCAAAAATAGAACTGTCTTCAACATCTCAAACAGAAATCAATCTTCCTTTCATCACTGCTGATGCATCTGGTGCAAAGCATCTGAATATCACATTGACTAGATCTAAGTTTGAGGCTTTGGTAAACCACTTGATTGAAAGGACAAAGGCACCGTGTAAGAGCTGTTTGAAGGATGCTAATGTATCCATCAAGGAAGTTGATGAGGTTCTTCTTGTTGGAGGGATGACCCGGGTGCCTAAAGTCCAGGAGGTGGTTTCAGCGATCTTTGGAAAGAGTCCTAGCAAAGGAGTAAATCCTGATGAGGCAGTTGCCATGGGAGCAGCTATTCAGGGTGGTATCCTACGTGGAGATGTTAAAGAGCTACTACTCCTAGATGTCACTCCACTTTCTCTGGGTATTGAGACTTTGGGTGGTATCTTTACCAGGTTGATTAACCGCAACACCACAATTCCTACTAAAAAGAGTCAGGTGTTTTCAACAGCAGCTGACAATCAGACTCAGGTTGGTATCAAGGTGCTACAAGGTGAGAGGGAGATGGCTGTAGACAACAAATCGCTTGGAGAATTTGAGCTTGTTGGCATTCCTCCTGCCCCAAGAGGCATGCCTCAGATTGAAGTCACATTTGATATAGATGCCAATGGGATTGTTACTGTCTCTGCCAAAGACAAGTCCACTGGGAAAGAACAACAAATCACCATCCGTTCATCTGGAGGACTCTCAGAAGATGAGATTGATAAGATGGTCAAAGAAGCAGAGTTGCATGCTCAGAAAGACCAAGAAAGAAAGGCTCTCATTGACATCAGAAACAGTGCAGATACAACCATCTACAGCATCGAGAAGAGTTTAGGTGAGTACAGAGATAAGATCCCCAGTGAAGTGGCCAAAGAGATTGAAGATGCAGTATCAGATTTGAGAACAGCAATGGCAGGAGACAATGCTGATGAAATTAAGGCAAAGCTTGACGCTGCAAACAAAGCTGTCTCCAAGATTGGAGAGCACATGTCAGGTGGTTCTAGTGGCAGTTCCTCAGCTGGAGGTTCTCAGGGTGGTGAACAGGCTCCCGAGGCAGAGTATGAGGAAGTCAAGAAATGACATTTAGGCGTGGTTTTGTAGCCATTTGTTTCTTATTAATCATCACATAATTGCAAGAATACAAGGTTACTTCTTTTGTATCTAATGTTGAAAACCATTTTTTGCTGGAAGGCTCTTTAATTTGTAGCACTTTTGGAGTCCAAAGTTCCGAACACACGGCTGTCTGAATAACGATTTTGAATTTTTTGCATAAAGTTTGTTCACTACGTTTGGCTCTGACTAGTATTTTG
>Glyma08g06950.1 sequence type=CDS gene model=Glyma08g06950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGCCGCGACCGCCTTGCTCCGCTCTCTCCGCCGCCGCGACCTTCCCTCGTCTTCTCTCTCCGCCTTTCGTTCGTTGACGAGTGGCACAAAGACATCATATGTAGGGAACAAGTGGGCAAGTTTGTCTCGGCCGTTCAGTTCAAAGCCTGCTGGTAATGATGTCATTGGAATTGATCTGGGTACTACCAATTCATGTGTTTCTGTTATGGAGGGAAAGAATCCCAAAGTTATTGAGAATTCTGAAGGAGCTCGAACAACACCATCAGTGGTTGCCTTCAACCAGAAAGCGGAGCTTCTTGTTGGTACACCAGCCAAGCGTCAGGCTGTGACAAACCCAACAAACACTCTTTTTGGAACCAAGCGTTTGATAGGTAGGCGTTTTGATGATTCTCAAACTCAGAAGGAGATGAAAATGGTTCCATACAAGATTGTTAAGGCTCCCAATGGAGATGCTTGGGTTGAAGCCAATGGGCAGCAGTATTCTCCCAGCCAAGTTGGTGCTTTTGTTCTCACCAAGATGAAGGAAACTGCTGAGTCATATCTTGGAAAGTCAGTTTCAAAAGCTGTAATTACTGTACCAGCTTACTTCAATGATGCTCAGAGACAGGCAACAAAAGATGCCGGTAGAATTGCTGGTCTTGATGTTCAAAGAATCATCAATGAGCCCACTGCTGCTGCACTTTCATATGGGATGAACAACAAGGAGGGTCTCATTGCAGTTTTTGATCTTGGAGGTGGAACATTTGATGTGTCCATCTTAGAGATTTCTAATGGTGTTTTTGAGGTGAAAGCCACAAATGGTGACACGTTCTTGGGAGGAGAGGATTTTGATAATGCTTTATTGGATTTTCTAGTGAATGAATTCAAAAGAACTGAGAATATTGATCTTTCAAAGGATAAACTTGCATTGCAGAGGCTTCGAGAAGCTGCTGAGAAAGCAAAAATAGAACTGTCTTCAACATCTCAAACAGAAATCAATCTTCCTTTCATCACTGCTGATGCATCTGGTGCAAAGCATCTGAATATCACATTGACTAGATCTAAGTTTGAGGCTTTGGTAAACCACTTGATTGAAAGGACAAAGGCACCGTGTAAGAGCTGTTTGAAGGATGCTAATGTATCCATCAAGGAAGTTGATGAGGTTCTTCTTGTTGGAGGGATGACCCGGGTGCCTAAAGTCCAGGAGGTGGTTTCAGCGATCTTTGGAAAGAGTCCTAGCAAAGGAGTAAATCCTGATGAGGCAGTTGCCATGGGAGCAGCTATTCAGGGTGGTATCCTACGTGGAGATGTTAAAGAGCTACTACTCCTAGATGTCACTCCACTTTCTCTGGGTATTGAGACTTTGGGTGGTATCTTTACCAGGTTGATTAACCGCAACACCACAATTCCTACTAAAAAGAGTCAGGTGTTTTCAACAGCAGCTGACAATCAGACTCAGGTTGGTATCAAGGTGCTACAAGGTGAGAGGGAGATGGCTGTAGACAACAAATCGCTTGGAGAATTTGAGCTTGTTGGCATTCCTCCTGCCCCAAGAGGCATGCCTCAGATTGAAGTCACATTTGATATAGATGCCAATGGGATTGTTACTGTCTCTGCCAAAGACAAGTCCACTGGGAAAGAACAACAAATCACCATCCGTTCATCTGGAGGACTCTCAGAAGATGAGATTGATAAGATGGTCAAAGAAGCAGAGTTGCATGCTCAGAAAGACCAAGAAAGAAAGGCTCTCATTGACATCAGAAACAGTGCAGATACAACCATCTACAGCATCGAGAAGAGTTTAGGTGAGTACAGAGATAAGATCCCCAGTGAAGTGGCCAAAGAGATTGAAGATGCAGTATCAGATTTGAGAACAGCAATGGCAGGAGACAATGCTGATGAAATTAAGGCAAAGCTTGACGCTGCAAACAAAGCTGTCTCCAAGATTGGAGAGCACATGTCAGGTGGTTCTAGTGGCAGTTCCTCAGCTGGAGGTTCTCAGGGTGGTGAACAGGCTCCCGAGGCAGAGTATGAGGAAGTCAAGAAATGA >Glyma08g06950.2 sequence type=CDS gene model=Glyma08g06950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAATGGTTCCATACAAGATTGTTAAGGCTCCCAATGGAGATGCTTGGGTTGAAGCCAATGGGCAGCAGTATTCTCCCAGCCAAGTTGGTGCTTTTGTTCTCACCAAGATGAAGGAAACTGCTGAGTCATATCTTGGAAAGTCAGTTTCAAAAGCTGTAATTACTGTACCAGCTTACTTCAATGATGCTCAGAGACAGGCAACAAAAGATGCCGGTAGAATTGCTGGTCTTGATGTTCAAAGAATCATCAATGAGCCCACTGCTGCTGCACTTTCATATGGGATGAACAACAAGGAGGGTCTCATTGCAGTTTTTGATCTTGGAGGTGGAACATTTGATGTGTCCATCTTAGAGATTTCTAATGGTGTTTTTGAGGTGAAAGCCACAAATGGTGACACGTTCTTGGGAGGAGAGGATTTTGATAATGCTTTATTGGATTTTCTAGTGAATGAATTCAAAAGAACTGAGAATATTGATCTTTCAAAGGATAAACTTGCATTGCAGAGGCTTCGAGAAGCTGCTGAGAAAGCAAAAATAGAACTGTCTTCAACATCTCAAACAGAAATCAATCTTCCTTTCATCACTGCTGATGCATCTGGTGCAAAGCATCTGAATATCACATTGACTAGATCTAAGTTTGAGGCTTTGGTAAACCACTTGATTGAAAGGACAAAGGCACCGTGTAAGAGCTGTTTGAAGGATGCTAATGTATCCATCAAGGAAGTTGATGAGGTTCTTCTTGTTGGAGGGATGACCCGGGTGCCTAAAGTCCAGGAGGTGGTTTCAGCGATCTTTGGAAAGAGTCCTAGCAAAGGAGTAAATCCTGATGAGGCAGTTGCCATGGGAGCAGCTATTCAGGGTGGTATCCTACGTGGAGATGTTAAAGAGCTACTACTCCTAGATGTCACTCCACTTTCTCTGGGTATTGAGACTTTGGGTGGTATCTTTACCAGGTTGATTAACCGCAACACCACAATTCCTACTAAAAAGAGTCAGGTGTTTTCAACAGCAGCTGACAATCAGACTCAGGTTGGTATCAAGGTGCTACAAGGTGAGAGGGAGATGGCTGTAGACAACAAATCGCTTGGAGAATTTGAGCTTGTTGGCATTCCTCCTGCCCCAAGAGGCATGCCTCAGATTGAAGTCACATTTGATATAGATGCCAATGGGATTGTTACTGTCTCTGCCAAAGACAAGTCCACTGGGAAAGAACAACAAATCACCATCCGTTCATCTGGAGGACTCTCAGAAGATGAGATTGATAAGATGGTCAAAGAAGCAGAGTTGCATGCTCAGAAAGACCAAGAAAGAAAGGCTCTCATTGACATCAGAAACAGTGCAGATACAACCATCTACAGCATCGAGAAGAGTTTAGGTGAGTACAGAGATAAGATCCCCAGTGAAGTGGCCAAAGAGATTGAAGATGCAGTATCAGATTTGAGAACAGCAATGGCAGGAGACAATGCTGATGAAATTAAGGCAAAGCTTGACGCTGCAAACAAAGCTGTCTCCAAGATTGGAGAGCACATGTCAGGTGGTTCTAGTGGCAGTTCCTCAGCTGGAGGTTCTCAGGGTGGTGAACAGGCTCCCGAGGCAGAGTATGAGGAAGTCAAGAAATGA
>Glyma08g06950.1 sequence type=predicted peptide gene model=Glyma08g06950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAATALLRSLRRRDLPSSSLSAFRSLTSGTKTSYVGNKWASLSRPFSSKPAGNDVIGIDLGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKAELLVGTPAKRQAVTNPTNTLFGTKRLIGRRFDDSQTQKEMKMVPYKIVKAPNGDAWVEANGQQYSPSQVGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTENIDLSKDKLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIERTKAPCKSCLKDANVSIKEVDEVLLVGGMTRVPKVQEVVSAIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAVDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSEDEIDKMVKEAELHAQKDQERKALIDIRNSADTTIYSIEKSLGEYRDKIPSEVAKEIEDAVSDLRTAMAGDNADEIKAKLDAANKAVSKIGEHMSGGSSGSSSAGGSQGGEQAPEAEYEEVKK* >Glyma08g06950.2 sequence type=predicted peptide gene model=Glyma08g06950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKMVPYKIVKAPNGDAWVEANGQQYSPSQVGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTENIDLSKDKLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIERTKAPCKSCLKDANVSIKEVDEVLLVGGMTRVPKVQEVVSAIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAVDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSEDEIDKMVKEAELHAQKDQERKALIDIRNSADTTIYSIEKSLGEYRDKIPSEVAKEIEDAVSDLRTAMAGDNADEIKAKLDAANKAVSKIGEHMSGGSSGSSSAGGSQGGEQAPEAEYEEVKK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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