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Report for Sequence Feature Glyma08g06940

Feature Type:gene_model
Chromosome:Gm08
Start:4971481
stop:4973224
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g06940
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G64430AT Annotation by Michelle Graham. TAIR10: Octicosapeptide/Phox/Bem1p family protein | chr5:25762540-25764081 REVERSE LENGTH=513 SoyBaseE_val: 3.00E-94ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF00564PFAM PB1 domain JGI ISS
UniRef100_A2Q1B1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Octicosapeptide/Phox/Bem1p n=1 Tax=Medicago truncatula RepID=A2Q1B1_MEDTR SoyBaseE_val: 3.00E-153ISS
UniRef100_UPI0001CAE6FCUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001CAE6FC related cluster n=1 Tax=unknown RepID=UPI0001CAE6FC SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g06940
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06940
ParalogEvidenceComments
Glyma07g30300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06940 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g065000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g06940
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g06940
>Glyma08g06940.1   sequence type=CDS   gene model=Glyma08g06940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAACTATCAGTACCCGGCGTCGTACCCTGACTCCGGCGAGTCCTCCCCGCGCTCGCGCGAGATCGACTTCGAGAACCCGCCGCCGTGGGACGAGCAGCAGAACCAAAACTACAAGGCCAAGTTCATGTGCAGCTACGGCGGCAAGATCCAGCCCCGCACCCACGACAATCAGCTCTCCTACGTCGGCGGCGACACCAAGATCCTCGCCGTCGACCGCTCCGTTAAGTTCTCCGCCTTCCTCTCCAAGCTCTCCGCCCTCTGCGACTCCCCGCCACAGGACCTCACCTTCAAGTACCAGCTCCCCGGCGAAGACCTCGACGCCCTCATCTCCGTCACCAACGACGACGACCTCGAACACATGATGCACGAATACGACAGACTCTATCGCCCTAACCTAAAACCTGTTAGAATGAGACTCTTCCTTTTCACACTCTCTAATTCAAACCCTAATTCCTCTTTCTCCTCCGAACGCGACCGTTTCGTTGAGGCTCTTAATTCGGGTCCGGTTCCTTCTCAACCCGATCCGATCAAAACCCCACCCGTTACGCCTTCTAATGTTGATTATCTCTTCGGTCTCGATAAAGCCGTTGCTCCTCCAAATCTTCCTCCGAACTTCGCAGCGGTTAAATTCCACGATCCGGTGCCGGAACCTGTCGCTCCGACGCCGGTAGAGTATCAATCGAGAGTTTCCGATCGGGTTGTTGGATCGGATCCGAATGTGAATTCGATGGAAATTCAGAGACAGATGCAGCAGGAGATGCAGCGATTGCAGATTGCGGAGAATGAATATCGTAGAAGGAGTGAGGATGGATTTGCAACTGGTTATGCTGCTGCAGCCGGAGGAGATTATTACATGCAGAAGGTGCAGGAGAAGGTTCCGCCGCAGAATGCGGCGGTGCCGCCTCCGGCGGCGTACTGGTCGGAGAAGCAGTTTTCCGGGGAGGGATATCAGACGACGGTGACGACGGCGGCTCCGGGAGGAGGTGACCAGCCGATGTATGTTATGGCGGCGCCGGGGACGTTCTATCACCACTCGCCGGTGATGCGACCTCCGGCGGCGGCGCAGGGATACTACGCTGTGCAGAGGATGGGTTCTGATGGCTACCGTGAACAGCAGGCGGTGTACGGAGGCATGGCTGCGCCGAAAGCGGGGTTTTCGACGGCGGGGATGGTTAAGGGGCCGGCGTATTCGGAGGGATATAGTGGCGGCGTGGTGAGGCCGGCGGGGTTGCCGGATAATGCGGCGTATGCGCAGGTGGCGTATGATAGCGCGAGTGGGAGACAGGTTTACTATACTGCGCAGGGAGGAGTGGTGCACGCGCCGCCGCAGTACCAGGGGGGTCCGCCTCAGGATGTGAGGCCGGGTGGGGTTTCGGTGGGGCAGGATGGTAAGGTGGTTAACAAGGTTAACCAAGGTTCTGTGTGA
Predicted protein sequences of Glyma08g06940
>Glyma08g06940.1   sequence type=predicted peptide   gene model=Glyma08g06940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENYQYPASYPDSGESSPRSREIDFENPPPWDEQQNQNYKAKFMCSYGGKIQPRTHDNQLSYVGGDTKILAVDRSVKFSAFLSKLSALCDSPPQDLTFKYQLPGEDLDALISVTNDDDLEHMMHEYDRLYRPNLKPVRMRLFLFTLSNSNPNSSFSSERDRFVEALNSGPVPSQPDPIKTPPVTPSNVDYLFGLDKAVAPPNLPPNFAAVKFHDPVPEPVAPTPVEYQSRVSDRVVGSDPNVNSMEIQRQMQQEMQRLQIAENEYRRRSEDGFATGYAAAAGGDYYMQKVQEKVPPQNAAVPPPAAYWSEKQFSGEGYQTTVTTAAPGGGDQPMYVMAAPGTFYHHSPVMRPPAAAQGYYAVQRMGSDGYREQQAVYGGMAAPKAGFSTAGMVKGPAYSEGYSGGVVRPAGLPDNAAYAQVAYDSASGRQVYYTAQGGVVHAPPQYQGGPPQDVRPGGVSVGQDGKVVNKVNQGSV*






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