Glyma08g06920 - SoyBase

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Report for Sequence Feature Glyma08g06920

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4961941
stop:	4966410
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64460	AT	Annotation by Michelle Graham. TAIR10: Phosphoglycerate mutase family protein \| chr5:25773009-25775104 REVERSE LENGTH=282	SoyBase	E_val: 4.00E-162	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009736	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4754	KOG	Predicted phosphoglycerate mutase	JGI		ISS
PTHR23029	Panther	PHOSPHOGLYCERATE MUTASE	JGI		ISS
PF00300	PFAM	Phosphoglycerate mutase family	JGI		ISS
UniRef100_G7JU06	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphoglycerate mutase-like protein n=1 Tax=Medicago truncatula RepID=G7JU06_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KQV4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQV4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g06920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06920

Paralog	Evidence	Comments
Glyma07g30320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g064900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g06920

Limit To All Plant Sequences

>Glyma08g06920.2   sequence type=transcript   gene model=Glyma08g06920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATGGAAATAGCACTCACTCACTTGCAGCGAAGAAGAAAAAAAATAAAAACACCATCAGCATCTTCACTCACCACGAAGGTTCCGTTCTCTGTGGATCTATATCTCTAGGGCACGTTACGTGGAAGGAAGCTCTTCACCGACTTCAATCGAAGAAGATGGATTACAGTGCTGGTTCGAGTCTGTTTCCGTTGCACCGTTGCAAAACCATTCACCTGGTGAGGCACGCGCAGGGGATTCACAATGTGGAGGGTGACAAAAACTACAAAGCCTACATGAACCCCGATTACTTCGATGCTCATCTCACTCCCTTGGGATGGCAACAGGTTGACAATTTGCGTAAGCATGTTCGCGACTCTGGCCTTATCAACACCATTGATCTAGTCATTGCATCTCCTTTGATGAGGACTCTACAAACAACTGTTGGGGTATTTGGAGGTGAGGGCTACACAGATAAAACAGACGTCCTTCCTCTTATGGTTGCAAATGCAGGAAATAGCTACCGTGCTGCAATTTCAAGTCTAAATTCCCCACCAATTGTTACTGTTGAACTTTGTCGTGAACATTTGGGAGTTCATCCCTGTGACAGAAGAAGAAGTGTTAGCGAGTATCAATTTCTTTTTCCCGCTGTTGATTTTTCACTGTTAGATAGTGATGAGGATACCTGGTGGAAGGCCAATGTTAGAGAGACAAAGGAAGAACTTGCAGCTAGGGGGATGAAGTTCCTTAACTGGTATGAGTTTGTTATAATTAGAAACTTCTAAAGGTTTATTTTTTGAGTTTATGCCAGCAATACTACATATTGGAAACACACTAAAATTGGACTTTGATGTGTAGCAAGTTAATATAATTCTACTATGTAAGGCTCTTCGCTATAGGATGATAAAATAAACCATTTTTTAAAAAATATTTTATGAAATTTACTATATATAGCTGAGTGTGTTTAATGTAATGTGATTGAAGCTGCTCAAAAGGCTGTCACTGAGCTCACCTGTGACCCTTGAAATTGGAAGACAAATTAATTTGCTTGATTCCTTTGTCTGATATTTCAGTGGGTA

Coding sequences of Glyma08g06920

Limit To All Plant Sequences

>Glyma08g06920.1   sequence type=CDS   gene model=Glyma08g06920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTACAGTGCTGGTTCGAGTCTGTTTCCGTTGCACCGTTGCAAAACCATTCACCTGGTGAGGCACGCGCAGGGGATTCACAATGTGGAGGGTGACAAAAACTACAAAGCCTACATGAACCCCGATTACTTCGATGCTCATCTCACTCCCTTGGGATGGCAACAGGTTGACAATTTGCGTAAGCATGTTCGCGACTCTGGCCTTATCAACACCATTGATCTAGTCATTGCATCTCCTTTGATGAGGACTCTACAAACAACTGTTGGGGTATTTGGAGGTGAGGGCTACACAGATAAAACAGACGTCCTTCCTCTTATGGTTGCAAATGCAGGAAATAGCTACCGTGCTGCAATTTCAAGTCTAAATTCCCCACCAATTGTTACTGTTGAACTTTGTCGTGAACATTTGGGAGTTCATCCCTGTGACAGAAGAAGAAGTGTTAGCGAGTATCAATTTCTTTTTCCCGCTGTTGATTTTTCACTGTTAGATAGTGATGAGGATACCTGGTGGAAGGCCAATGTTAGAGAGACAAAGGAAGAACTTGCAGCTAGGGGGATGAAGTTCCTTAACTGGTTGTGGACACGAAAAGAGAAGGAGATAGCAATTGTGACACATAGTGGATTCTTGTTTCATACTCTGAATGCCTTTGGAAGTGATTGCCACCCCTTGGTAAAGAAAGAAATATCCAAGCACTTTGCTAATTGTGAACTTCGCTCCATGGTCATTGTGGATAGAGGTATGATAGGATTGGAACAATCAACCACTAACTATCCAGGCAAGATACCTTCAGGGCTGGACCTCCCTAGTGATGTTGCAGATGAGAAGTCTGAGAAATAA

>Glyma08g06920.2   sequence type=CDS   gene model=Glyma08g06920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTACAGTGCTGGTTCGAGTCTGTTTCCGTTGCACCGTTGCAAAACCATTCACCTGGTGAGGCACGCGCAGGGGATTCACAATGTGGAGGGTGACAAAAACTACAAAGCCTACATGAACCCCGATTACTTCGATGCTCATCTCACTCCCTTGGGATGGCAACAGGTTGACAATTTGCGTAAGCATGTTCGCGACTCTGGCCTTATCAACACCATTGATCTAGTCATTGCATCTCCTTTGATGAGGACTCTACAAACAACTGTTGGGGTATTTGGAGGTGAGGGCTACACAGATAAAACAGACGTCCTTCCTCTTATGGTTGCAAATGCAGGAAATAGCTACCGTGCTGCAATTTCAAGTCTAAATTCCCCACCAATTGTTACTGTTGAACTTTGTCGTGAACATTTGGGAGTTCATCCCTGTGACAGAAGAAGAAGTGTTAGCGAGTATCAATTTCTTTTTCCCGCTGTTGATTTTTCACTGTTAGATAGTGATGAGGATACCTGGTGGAAGGCCAATGTTAGAGAGACAAAGGAAGAACTTGCAGCTAGGGGGATGAAGTTCCTTAACTGGTATGAGTTTGTTATAATTAGAAACTTCTAA

Predicted protein sequences of Glyma08g06920

Limit To All Plant Sequences

>Glyma08g06920.1   sequence type=predicted peptide   gene model=Glyma08g06920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDYSAGSSLFPLHRCKTIHLVRHAQGIHNVEGDKNYKAYMNPDYFDAHLTPLGWQQVDNLRKHVRDSGLINTIDLVIASPLMRTLQTTVGVFGGEGYTDKTDVLPLMVANAGNSYRAAISSLNSPPIVTVELCREHLGVHPCDRRRSVSEYQFLFPAVDFSLLDSDEDTWWKANVRETKEELAARGMKFLNWLWTRKEKEIAIVTHSGFLFHTLNAFGSDCHPLVKKEISKHFANCELRSMVIVDRGMIGLEQSTTNYPGKIPSGLDLPSDVADEKSEK*

>Glyma08g06920.2   sequence type=predicted peptide   gene model=Glyma08g06920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDYSAGSSLFPLHRCKTIHLVRHAQGIHNVEGDKNYKAYMNPDYFDAHLTPLGWQQVDNLRKHVRDSGLINTIDLVIASPLMRTLQTTVGVFGGEGYTDKTDVLPLMVANAGNSYRAAISSLNSPPIVTVELCREHLGVHPCDRRRSVSEYQFLFPAVDFSLLDSDEDTWWKANVRETKEELAARGMKFLNWYEFVIIRNF*

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