Report for Sequence Feature Glyma08g06880
Feature Type: gene_model
Chromosome: Gm08
Start: 4926277
stop: 4934131
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g06880
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G64500 AT
Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr5:25780511-25783474 FORWARD LENGTH=484
SoyBase E_val: 0 ISS
GO:0006635 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation
SoyBase N/A ISS
GO:0016126 GO-bp
Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process
SoyBase N/A ISS
GO:0016558 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix
SoyBase N/A ISS
GO:0046520 GO-bp
Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG1330
KOG
Sugar transporter/spinster transmembrane protein
JGI ISS
PTHR24003 Panther
MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PR
JGI ISS
PTHR24003:SF111 Panther
JGI ISS
PF07690 PFAM
Major Facilitator Superfamily
JGI ISS
UniRef100_G7JTZ9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Spinster-like protein n=1 Tax=Medicago truncatula RepID=G7JTZ9_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002338E30 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338E30 related cluster n=1 Tax=unknown RepID=UPI0002338E30
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g06880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g06880
Paralog Evidence Comments
Glyma07g30370 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g06880 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g064500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g06880
Coding sequences of Glyma08g06880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g06880.2 sequence type=CDS gene model=Glyma08g06880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCACAACAACAAGAACATGAAGGAAAACCAGAGTCTTCTTCCTCTCAACCTGAGTCTTCTTTGGAACCAGACATGGGCACCAAGTCCACAATGATTCCGTCAACTTCATGGTTTACACCAAAGAGGTTACTGGCTATATTTTGTGTGATCAACTTGTTAAACTATTTGGACCGAGGAGCGATTGCAAGCAATGGGGTTAATGGAAGTCAACGAACTTGTGAAGGCGGTACCTGCAAATCTGGAACAGGAATACAGGGGGATTTTAACTTGAACAATTTTGAGGATGGAGTTCTATCATCTGCTTTTATGGTTGGACTTCTTGTGGCTTCTCCAATATTTGCTTCTCTAGCAAAGAGCGTAAACCCATTTAGACTAATTGGAGTGGGATTATCAGTTTGGACCCTTGCAACCTTATGTTGTGGTTTCTCTTTCAATTTCTGGTCCATTGCAGTCTGTCGCATGCTAGTTGGTGTTGGTGAGGCTTCATTTATGAGTCTTGCAGCACCTTTCATTGATGACAATGCCCCAGTTTCACAGAAAACGGCATGGCTTGCTATATTTTACATGTGTATACCAGCAGGATATGCAATTGGCTACATCTATGGTGGTTTGGTTGGAAACCATTTTGGTTGGCGTTATGCGTTTTGGGTGGAAGCTATATTGATGTTTCCATTTGCTATTTTGGGATTTTTTATGAAGCCTTTGCAGTTAAAAGGTTTTGCCCCTACTGATTCAGAAAAGGCACTGATACTGGAGACAGTGGTATCAGAAGTTCCAGATGTCGGGGTTTCAAATGGAAAAGATGAAGCGTTGTCCTTGAAGGAAGAGTTCAGAGACAAAAGCTCACATGAACCTTCCAGGTCAAAATGTGCAATATTAGATCAGTTCTCAAGATTTCTGAAAGACATGAAAGAACTTTTGCTTGATAAGGTTTTTGTTGTCAATGTTCTAGGTTACATAGCATACAACTTTGTAATAGGTGCTTACTCATATTGGGGCCCCAAAGCTGGTTATAGTATATATAACATGACTAATGCAGATATGATGTTTGGAGGAATTACTGTTGTATGTGGGATATTGGGCACCTTAGCAGGAGGTCTTGTTCTTGATTTCATGACTAACACAATATCAAATGCATTTAAGCTTCTCTCATTAACAACATTTATTGGTGGTGCATGCTGTTTTGGTGCTTTCTTATTTAAAAGCGAGTATGGCTTCCTTGCCCTTTTTGCTTTTGGTGAACTACTTGTATTTGCCACTCAGGGTCCTGTGAATTATGTATGTCTCCATTGTGTTAAACCAAGTTTGAGGCCGCTGTCTATGGCTATGTCTACTGTTGCTATTCATATCTTTGGAGATGTGCCTTCCTCACCTCTCGTTGGACTTATCCAGGACAAAATTAATAACTGGAGAACGACTGCATTGATTCTAACAACTATATTCTTTCCAGCAGCTGCAATATGGTTTATAGGAATATTTTTGCCCAGTGTGGATAGATTTAATGAAGATAGTGAGCATGAAGTATCAAGCGTGGAAAGGACAAGCACAGCACCATTGCTTGAAGAGGGCACTGCTGAAACATCAGCATCTGGTCAATCCCAAGAATGCTGA
Predicted protein sequences of Glyma08g06880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g06880.2 sequence type=predicted peptide gene model=Glyma08g06880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAQQQEHEGKPESSSSQPESSLEPDMGTKSTMIPSTSWFTPKRLLAIFCVINLLNYLDRGAIASNGVNGSQRTCEGGTCKSGTGIQGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAKSVNPFRLIGVGLSVWTLATLCCGFSFNFWSIAVCRMLVGVGEASFMSLAAPFIDDNAPVSQKTAWLAIFYMCIPAGYAIGYIYGGLVGNHFGWRYAFWVEAILMFPFAILGFFMKPLQLKGFAPTDSEKALILETVVSEVPDVGVSNGKDEALSLKEEFRDKSSHEPSRSKCAILDQFSRFLKDMKELLLDKVFVVNVLGYIAYNFVIGAYSYWGPKAGYSIYNMTNADMMFGGITVVCGILGTLAGGLVLDFMTNTISNAFKLLSLTTFIGGACCFGAFLFKSEYGFLALFAFGELLVFATQGPVNYVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSSPLVGLIQDKINNWRTTALILTTIFFPAAAIWFIGIFLPSVDRFNEDSEHEVSSVERTSTAPLLEEGTAETSASGQSQEC*