Glyma08g06880 - SoyBase

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Report for Sequence Feature Glyma08g06880

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4926277
stop:	4934131
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64500	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr5:25780511-25783474 FORWARD LENGTH=484	SoyBase	E_val: 0	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0046520	GO-bp	Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1330	KOG	Sugar transporter/spinster transmembrane protein	JGI		ISS
PTHR24003	Panther	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PR	JGI		ISS
PTHR24003:SF111	Panther		JGI		ISS
PF07690	PFAM	Major Facilitator Superfamily	JGI		ISS
UniRef100_G7JTZ9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Spinster-like protein n=1 Tax=Medicago truncatula RepID=G7JTZ9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338E30	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338E30 related cluster n=1 Tax=unknown RepID=UPI0002338E30	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g06880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06880

Paralog	Evidence	Comments
Glyma07g30370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g064500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g06880

Limit To All Plant Sequences

>Glyma08g06880.2   sequence type=CDS   gene model=Glyma08g06880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACAACAACAAGAACATGAAGGAAAACCAGAGTCTTCTTCCTCTCAACCTGAGTCTTCTTTGGAACCAGACATGGGCACCAAGTCCACAATGATTCCGTCAACTTCATGGTTTACACCAAAGAGGTTACTGGCTATATTTTGTGTGATCAACTTGTTAAACTATTTGGACCGAGGAGCGATTGCAAGCAATGGGGTTAATGGAAGTCAACGAACTTGTGAAGGCGGTACCTGCAAATCTGGAACAGGAATACAGGGGGATTTTAACTTGAACAATTTTGAGGATGGAGTTCTATCATCTGCTTTTATGGTTGGACTTCTTGTGGCTTCTCCAATATTTGCTTCTCTAGCAAAGAGCGTAAACCCATTTAGACTAATTGGAGTGGGATTATCAGTTTGGACCCTTGCAACCTTATGTTGTGGTTTCTCTTTCAATTTCTGGTCCATTGCAGTCTGTCGCATGCTAGTTGGTGTTGGTGAGGCTTCATTTATGAGTCTTGCAGCACCTTTCATTGATGACAATGCCCCAGTTTCACAGAAAACGGCATGGCTTGCTATATTTTACATGTGTATACCAGCAGGATATGCAATTGGCTACATCTATGGTGGTTTGGTTGGAAACCATTTTGGTTGGCGTTATGCGTTTTGGGTGGAAGCTATATTGATGTTTCCATTTGCTATTTTGGGATTTTTTATGAAGCCTTTGCAGTTAAAAGGTTTTGCCCCTACTGATTCAGAAAAGGCACTGATACTGGAGACAGTGGTATCAGAAGTTCCAGATGTCGGGGTTTCAAATGGAAAAGATGAAGCGTTGTCCTTGAAGGAAGAGTTCAGAGACAAAAGCTCACATGAACCTTCCAGGTCAAAATGTGCAATATTAGATCAGTTCTCAAGATTTCTGAAAGACATGAAAGAACTTTTGCTTGATAAGGTTTTTGTTGTCAATGTTCTAGGTTACATAGCATACAACTTTGTAATAGGTGCTTACTCATATTGGGGCCCCAAAGCTGGTTATAGTATATATAACATGACTAATGCAGATATGATGTTTGGAGGAATTACTGTTGTATGTGGGATATTGGGCACCTTAGCAGGAGGTCTTGTTCTTGATTTCATGACTAACACAATATCAAATGCATTTAAGCTTCTCTCATTAACAACATTTATTGGTGGTGCATGCTGTTTTGGTGCTTTCTTATTTAAAAGCGAGTATGGCTTCCTTGCCCTTTTTGCTTTTGGTGAACTACTTGTATTTGCCACTCAGGGTCCTGTGAATTATGTATGTCTCCATTGTGTTAAACCAAGTTTGAGGCCGCTGTCTATGGCTATGTCTACTGTTGCTATTCATATCTTTGGAGATGTGCCTTCCTCACCTCTCGTTGGACTTATCCAGGACAAAATTAATAACTGGAGAACGACTGCATTGATTCTAACAACTATATTCTTTCCAGCAGCTGCAATATGGTTTATAGGAATATTTTTGCCCAGTGTGGATAGATTTAATGAAGATAGTGAGCATGAAGTATCAAGCGTGGAAAGGACAAGCACAGCACCATTGCTTGAAGAGGGCACTGCTGAAACATCAGCATCTGGTCAATCCCAAGAATGCTGA

Predicted protein sequences of Glyma08g06880

Limit To All Plant Sequences

>Glyma08g06880.2   sequence type=predicted peptide   gene model=Glyma08g06880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQQQEHEGKPESSSSQPESSLEPDMGTKSTMIPSTSWFTPKRLLAIFCVINLLNYLDRGAIASNGVNGSQRTCEGGTCKSGTGIQGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAKSVNPFRLIGVGLSVWTLATLCCGFSFNFWSIAVCRMLVGVGEASFMSLAAPFIDDNAPVSQKTAWLAIFYMCIPAGYAIGYIYGGLVGNHFGWRYAFWVEAILMFPFAILGFFMKPLQLKGFAPTDSEKALILETVVSEVPDVGVSNGKDEALSLKEEFRDKSSHEPSRSKCAILDQFSRFLKDMKELLLDKVFVVNVLGYIAYNFVIGAYSYWGPKAGYSIYNMTNADMMFGGITVVCGILGTLAGGLVLDFMTNTISNAFKLLSLTTFIGGACCFGAFLFKSEYGFLALFAFGELLVFATQGPVNYVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSSPLVGLIQDKINNWRTTALILTTIFFPAAAIWFIGIFLPSVDRFNEDSEHEVSSVERTSTAPLLEEGTAETSASGQSQEC*

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