Glyma08g06860 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g06860

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4911092
stop:	4921392
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G14255	AT	Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein with DHHC zinc finger domain \| chr2:6036974-6040892 FORWARD LENGTH=536	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0509	KOG	Ankyrin repeat and DHHC-type Zn-finger domain containing proteins	JGI		ISS
PTHR22883	Panther	ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN	JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
PF01529	PFAM	DHHC zinc finger domain	JGI		ISS
UniRef100_G7JTZ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Palmitoyltransferase n=2 Tax=Medicago truncatula RepID=G7JTZ6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KQU7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQU7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g06860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06860

Paralog	Evidence	Comments
Glyma07g30380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g064300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g06860

Limit To All Plant Sequences

>Glyma08g06860.1   sequence type=CDS   gene model=Glyma08g06860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCTCGGAGATCGAGGTGGTTTCATCATCATCATCGGTCTCCAAACCCAACAACGACCAGCCTCCAATCCTCGACGTTTTCACCGCCTCTGCTCACGGCGACTTCAACAAATTGAGAACCTTCGTCGAACAAGACGGTGCCTCCGTCTCTCTTCCCGATTTTAGCGGCTATTACGCTCTTCAGTGGGCCTCGCTCAACAACTTTCACGACATTGCGCACTATCTCATTCAGCATGGGGCGGATGTCAATGCTAAAGACAACATGCAACAAACGGCATTGCACTGGGCAGCGGTTCACGGTTCAACTCTAGCTGCTGATGTGCTTGTGGAGAACGGTGCTCGGGTCGAAGCTGCAGATGTAAATGGATACCGGGCAGTTCATGTTGCTGCACAATTTGGACAGACAGCTTTCTTAAATCATATTGTAGTAAAGTACCATGCTGATTTTGATGTGCCTGATAATGATGGAAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCTGACACAGTAAGATTGCTTCTATTTAGAGATGCAAGTCAAGGAAGACAAGATAAAGATGGTTGTACACCGTTGCACTGGGCTGCATTAAGGGGAAATGCAGAGGCATGTGCTGTGCTTGTACATGCAGGCACAAAAGAAGAACTGATGATGAAGGACAATGCTGGGAACACACCTGTACAGCTTGCATATGATAAAGGTCATCGGCATGTCGCTCCTTTCCTTTCAAATCAACAACGGGCTCATAGCAACTACTGGAAAGGGAAACTGTGTAGTGGGATAGTGACAGATATTGGTTATGCTCCCATCTTATTCTGTACTATAATCTTTCTCTCAATCCTCTTCATCAACTCAGTTGTTGCAGCTCCTAACCTTAAAAAGATTACTGCTGTTGTTGGACTTTGGGCATGGACAGCGCTTTCTTCGGCTGTTGGTTCCCTGATTATGTTCTATAAGTGCAGTAGTAAAGATCCTGGTTATATAAAACGACTGGGAGAATTGGGTACTCAAAGTGATACAGAGGATCCTTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGATAATAAGACCTGTCCGATCTAAGCATTGCCCAACTTGTAAGCGATGTGTGGAACAGTTTGACCACCACTGTCCATGGATATCTAACTGTGTTGGGAAGAGGAACAAAAGGGATTTCTTTATTTTTATCTGCCTGGGAACTTTGACTTCTTCCCTTTCTGGTGCCGTTGCAGTTCAAAGAATTTGTACATCTAAACCAGCATTACTGGCAGGAGAAACATGGATCCATTATGTGTTAGTAAGACATCTAGGTTTAGTTGTGTTTTTGGTGATGGATGCTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATGATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGATTATCTTCGTGGTCCTGATGGGCGGTTCAGAAACCCATACAACCACGGTTGTTGGAAGAATTGTGCTGACTTCTTTTTTCTCGGCTATACAAATGATGATGAGATTGCTTGGCCTCCATTACAGCAGGTGGCAACTTAG

Predicted protein sequences of Glyma08g06860

Limit To All Plant Sequences

>Glyma08g06860.1   sequence type=predicted peptide   gene model=Glyma08g06860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSEIEVVSSSSSVSKPNNDQPPILDVFTASAHGDFNKLRTFVEQDGASVSLPDFSGYYALQWASLNNFHDIAHYLIQHGADVNAKDNMQQTALHWAAVHGSTLAADVLVENGARVEAADVNGYRAVHVAAQFGQTAFLNHIVVKYHADFDVPDNDGRSPLHWAAYKGFADTVRLLLFRDASQGRQDKDGCTPLHWAALRGNAEACAVLVHAGTKEELMMKDNAGNTPVQLAYDKGHRHVAPFLSNQQRAHSNYWKGKLCSGIVTDIGYAPILFCTIIFLSILFINSVVAAPNLKKITAVVGLWAWTALSSAVGSLIMFYKCSSKDPGYIKRLGELGTQSDTEDPLLNIDLNSSSVWMGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICLGTLTSSLSGAVAVQRICTSKPALLAGETWIHYVLVRHLGLVVFLVMDAVVFVATTTLTITQASMIARNVTTNELANSSRYDYLRGPDGRFRNPYNHGCWKNCADFFFLGYTNDDEIAWPPLQQVAT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain