Glyma08g06840 - SoyBase

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Report for Sequence Feature Glyma08g06840

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4905480
stop:	4909148
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33670	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein \| chr4:16169670-16171446 REVERSE LENGTH=319	SoyBase	E_val: 0	ISS
GO:0019853	GO-bp	Annotation by Michelle Graham. GO Biological Process: L-ascorbic acid biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004033	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aldo-keto reductase (NADP) activity	SoyBase	N/A	ISS
GO:0010349	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-galactose dehydrogenase activity	SoyBase	N/A	ISS
KOG1576	KOG	Predicted oxidoreductase	JGI		ISS
PTHR11732	Panther	ALDO/KETO REDUCTASE	JGI		ISS
PTHR11732:SF8	Panther	OXIDOREDUCTASE-RELATED	JGI		ISS
PF00248	PFAM	Aldo/keto reductase family	JGI		ISS
UniRef100_C6TI51	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TI51_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7JTZ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Voltage-gated potassium channel subunit beta-2 n=1 Tax=Medicago truncatula RepID=G7JTZ5_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g06840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06840

Paralog	Evidence	Comments
Glyma07g30395	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g064100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g06840

Limit To All Plant Sequences

>Glyma08g06840.1   sequence type=CDS   gene model=Glyma08g06840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACTACGTGAGCTTGGAAGAACCGGACTGAAACTCAGCACTGTAGGATTCGGAGCTTCTCCACTGGGCAATGTCTTCGGCGATGTTTCCGAGGAACAAGCCAACGCTTCCGTTCGCCTCGCTTTCCAATCCGGCATCAATTTCTTCGACACTTCTCCGTACTACGGAGGGACACTGTCGGAAAAAGTTCTGGGAAAGGCACTGAAGGCTCTGGGAGCTCCGAGGAACTCGTACGTTGTGGCAACGAAGTGCGGACGGTACAAGGAGGGTTTCGATTTCAGCGCGGAGAGAGTGACGAGAAGCATTGAAGAGAGCTTGGAAAGGTTGCAGCTTGACTACGTCGACATTCTCCAATGCCACGACATCGAGTTCGGCTCCTTAGACCAGGTTGTGAATGAGACGATTCCAGCGCTTGTGAAGCTGAAGGAAGCAGGGAAGGCGCGGTTCATTGGAATAACAGGGCTTCCTCTGGGGATTTTCAGTTACGTGCTTGATAGGGTTCCGCCTGGGACGCTGGATGTTGTGCTTTCATATTGCCATTACTGTGTGAATGACACTAGCTTGGGGGATTTGGTGCCCTATTTGAAGACCAAAGGGGTTGGCATTATCAATGCTTCTCCCTTGTCTATGGGCCTTCTCACCGAGTCTGGCCCGCCTGAATGGCATCCCGCATCACTGGAACTCAAGTCTGCATGTCAAGCTGCTGCTACCCATTGTAAAGAAAAAGGAAAAAACATTTCAAAGTTAGCATTGCAGTACAGCTTGTTAAATAAGGAAATCACATCAGTGCTTGTAGGCATGAAGTCTGTTGAACAGGTGGAGGAAAATGTTGCTGCCGCAAGAGAACTTGCAACTTCTGGAATTGATGAAGAGACTCTGTCTGAAGTCGAAGCTATTCTGAAGCCTGTTAAAAACCAGTCGTGGCCAAGTGGAATCCAGCAGAGCTGA

Predicted protein sequences of Glyma08g06840

Limit To All Plant Sequences

>Glyma08g06840.1   sequence type=predicted peptide   gene model=Glyma08g06840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELRELGRTGLKLSTVGFGASPLGNVFGDVSEEQANASVRLAFQSGINFFDTSPYYGGTLSEKVLGKALKALGAPRNSYVVATKCGRYKEGFDFSAERVTRSIEESLERLQLDYVDILQCHDIEFGSLDQVVNETIPALVKLKEAGKARFIGITGLPLGIFSYVLDRVPPGTLDVVLSYCHYCVNDTSLGDLVPYLKTKGVGIINASPLSMGLLTESGPPEWHPASLELKSACQAAATHCKEKGKNISKLALQYSLLNKEITSVLVGMKSVEQVEENVAAARELATSGIDEETLSEVEAILKPVKNQSWPSGIQQS*

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