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Report for Sequence Feature Glyma08g06790

Feature Type:gene_model
Chromosome:Gm08
Start:4870470
stop:4876748
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g06790
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G33680AT Annotation by Michelle Graham. TAIR10: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr4:16171847-16174630 REVERSE LENGTH=461 SoyBaseE_val: 0ISS
GO:0009058GO-bp Annotation by Michelle Graham. GO Biological Process: biosynthetic process SoyBaseN/AISS
GO:0009089GO-bp Annotation by Michelle Graham. GO Biological Process: lysine biosynthetic process via diaminopimelate SoyBaseN/AISS
GO:0009693GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0008483GO-mf Annotation by Michelle Graham. GO Molecular Function: transaminase activity SoyBaseN/AISS
GO:0010285GO-mf Annotation by Michelle Graham. GO Molecular Function: L,L-diaminopimelate aminotransferase activity SoyBaseN/AISS
GO:0016740GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity SoyBaseN/AISS
GO:0030170GO-mf Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding SoyBaseN/AISS
KOG0257 KOG Kynurenine aminotransferase, glutamine transaminase K JGI ISS
PTHR11751Panther SUBGROUP I AMINOTRANSFERASE RELATED JGI ISS
PTHR11751:SF22Panther AMINOTRANSFERASE JGI ISS
PF00155PFAM Aminotransferase class I and II JGI ISS
UniRef100_G7JTY4UniRef Annotation by Michelle Graham. Most informative UniRef hit: LL-diaminopimelate aminotransferase n=1 Tax=Medicago truncatula RepID=G7JTY4_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KQU2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQU2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g06790
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06790
ParalogEvidenceComments
Glyma07g30460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06790 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g063500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g06790
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g06790
>Glyma08g06790.1   sequence type=CDS   gene model=Glyma08g06790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTATAACGCACAGCCTCACTACTCCACTCTCTTCTTCTTCCTCTGCTTTCTTAGCTCCTTCTTCCTTCAATTGCAGGGGACAGGTTTCGTTGCCTGTGAAGAGCGTGAGCATTTGCAAATGCGTTGCCACACCCGAAGCTGAGACTGCCTACAAGACAGGGGTCAATCGCAATCCAAATATGGGGAAACTTCAAGCTGGCTATCTCTTTCCCGAGATTGCTAGAAGAAGGTCTGCGCACTTGCTGAAGTACCCTGATGCTAAAGTAATAAGCCTTGGAATTGGTGATACAACTGAACCTATTCCTGAAGTCATAACTGATGCAATGTCAAAGAGATCACATGCATTGTCGACTATAGAAGGATACAGTGGGTATGGAGCTGAACAAGGTGAAAAGCCATTAAGAAGGGCACTTGCTTCAACATTTTACAGCGATCTTGGCATAGAAGAGGATGATATATTTGTCTCAGATGGAGCAAAGTGTGATATATCTCGTCTCCAGATTGTCTTTGGGTCAAATGTAAAAATGGCTGTGCAAGACCCTTCATATCCGGCCTATGTAGACTCTAGTGTAATTATGGGCCAGACTGGCCTCTTCCAGAAGAATGTTGAGAAGTTTGCAAACATTGAATACATGAGGTGTAATCCGGAAAATGGTTTCTTCCCTGATTTGTCTTCAATTTCTCGACCAGATATAATATTTTTCTGTTCTCCAAACAATCCTACTGGTGCTGTGGCAACAAGGGAACAACTGACCCAACTAGTTCAGTTTGCTAAGGACAATGGTTCTATAGTAATCCACGATTCAGCTTATGCAATGTATATTTCTGGTGACAACCCTCGCTCAATATTTGAAATTCCTGGAGCCAAAGAGGTTGCCATTGAGACTTCATCATTTAGCAAGTATGCTGGGTTCACTGGAGTCCGATTGGGTTGGACTGTGGTTCCGAAGCAGTTGCTGTTTTCTGATGGATTTCCTGTTGCCAAGGACTTCAACCGTATTGTATGCACTTGTTTCAATGGTGCTTCAAATATTTCCCAGGCAGGCGGTCTGGCTTGCCTTTCACCAGAAGGTCTTAAGGCTATGCGTGATGTTATTGGATTCTACAAGGAAAATACTAACATAATAATGGAGACATTTGATTCTCTTGGGTTTAAAGTCTATGGAGGGAAAGATGCACCATATGTGTGGGTCCATTTTCCCGGCCGAAGCTCATGGGATGTATTCGCTGAGATTCTTGAGAAGACTCATGTGGTTACAACCCCTGGTAGTGGTTTTGGACCTGGTGGTGAAGGTTTTATCAGGGTTAGTGCCTTTGGTCACAGGGAAAATGTCTTGGAGGCATGCAGAAGGTTCAAGCAGCTATACAAGTGA
Predicted protein sequences of Glyma08g06790
>Glyma08g06790.1   sequence type=predicted peptide   gene model=Glyma08g06790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSITHSLTTPLSSSSSAFLAPSSFNCRGQVSLPVKSVSICKCVATPEAETAYKTGVNRNPNMGKLQAGYLFPEIARRRSAHLLKYPDAKVISLGIGDTTEPIPEVITDAMSKRSHALSTIEGYSGYGAEQGEKPLRRALASTFYSDLGIEEDDIFVSDGAKCDISRLQIVFGSNVKMAVQDPSYPAYVDSSVIMGQTGLFQKNVEKFANIEYMRCNPENGFFPDLSSISRPDIIFFCSPNNPTGAVATREQLTQLVQFAKDNGSIVIHDSAYAMYISGDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVVPKQLLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGLKAMRDVIGFYKENTNIIMETFDSLGFKVYGGKDAPYVWVHFPGRSSWDVFAEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRENVLEACRRFKQLYK*






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