Glyma08g06780 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g06780

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4861251
stop:	4866558
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G14520	AT	Annotation by Michelle Graham. TAIR10: CBS domain-containing protein with a domain of unknown function (DUF21) \| chr2:6182362-6184648 REVERSE LENGTH=423	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2118	KOG	Predicted membrane protein, contains two CBS domains	JGI		ISS
PTHR12064	Panther	ANCIENT CONSERVED DOMAIN PROTEIN-RELATED	JGI		ISS
PF00571	PFAM	CBS domain	JGI		ISS
PF01595	PFAM	Domain of unknown function DUF21	JGI		ISS
UniRef100_G7JTY3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Metal transporter CNNM4 n=1 Tax=Medicago truncatula RepID=G7JTY3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KQT9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQT9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g06780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06780

Paralog	Evidence	Comments
Glyma07g30470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g063400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g06780

Limit To All Plant Sequences

>Glyma08g06780.2   sequence type=transcript   gene model=Glyma08g06780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTGGACAGACTATAAAGTGAGCGAATGGTCCAATCCATCCATTATTCTCTGTGTGTCTTTCTCTACTTCTTTCCCTTTCCCCAACCCCTCATACGTTACTCTTTAAATACGCACCACATCTTCACGTGCCTCTCGGTTCTTCAGTCCAAACAATGGCCATGGTTGAGCTCTGGTGGATTACGTGCTTTCTCTAACTACTGTTTTCCACACTTAACGAACCAGAACACAGTGAGAAAGACATAATGGCGGTGGAGTACACATGCTGCTCAACGGCCTTCTTCGTTCACATACTGGTCATCGTGCTGCTCGTGCTTTTCGCGGGCCTCATGTCGGGCCTCACCTTGGGCCTCATGTCGCTCAGCCTCGTTGATCTTGAAGTTCTTGCTAAGTCTGGTACTCCTCAGGATCGTAAACACGCTGAGAAGATATTACCAGTTGTCAAAAACCAACATTTATTGCTATGTACTCTGCTAATTTGCAATGCTGCAGCCATGGAGACACTTCCTATTTTTCTTGATGGCCTTGTTACTGCATGGGGCGCTATCCTAATTTCTGTGACATTAATTCTTTTGTTTGGTGAGATTATACCCCAATCAGTTTGTTCTCGGTATGGTTTGGCTATTGGTGCATCAGTGGCTCCCTTTGTCCGTGTGCTTGTATGCATATGTTTTCCAGTTGCCTATCCAATTAGTAAGTTATTAGATTTTTTGCTGGGCCATCGACATGAAGCCCTATTCCGTAGAGCTGAGTTGAAAACACTCGTAAATTTGCATGGTAATGAGGCTGGAAAAGGGGGGGAACTGACACATGATGAAACAACGATCATTGCCGGGGCACTTGAACTCAGTGAGAAGACGGCGAGTGATGCCATGACTCCTATATCTGAAACATTTACTGTTGATATTAATTCAAAGCTTGATAGGGAACTGATGAATGAGATATTGGAGAAAGGGCACAGCAGAGTCCCAGTCTATTATGAGCAGCCTACAAACATTATTGGACTTGTACTGGTCAAGAATTTATTGACAGTTCATCCAGAAGATGAAGCACCCATGAAGAGTGTAACCATACGCAGGATTCCAAGGGTTCCAGAAAGTATGCCACTTTATGACATTTTGAATGAGTTTCAGAAGGGCCATAGCCACATGGCAGTTGTTGTCAGACGGTGTGACAAGACTAACCAACAATCTTCCCAAAATAATGCAAATGGTAAAAACATGCTATAAACCGTTTAAAACTTTGAAACTGAATTTTTCTTTCTTAATAAAATGCTCCGTGTCTCACGCCTCTGAAATAGACTCGGTGAGAGATGTTAAGGTGGATATTGATGGTGAAAAGCCTCCCAAAGAGAAAGCTTTGAAACCCAAGATGCCACTCCACAAGTGGAAAAGCTTTCCAAATACAAACAAGTCATCAAATAGGGGTTCTCGGAGCAGAAAATGGTCAAAAAATATGTACTCGGATATTTTGGAGATAGATGGAAGTCCCCTTCCAAAGCTCCCTGAAGAAGAAGAAGCCGTTGGAATTATTACCATGGAAGATGTCATTGAAGAGCTTTTACAGGAGGAGATCTTTGATGAGACAGATCATCATTTTGAAGACTCATAACAGTGGCTTTTTTCCATAAAACCTTCCATGTTCATATTTCTTGTTTGGACCTTAAAAATAATTAAATAGATAATGCGGTTTAGGGTTGAAAGCTGCTGTATAGAGATCTGAGTTGTGATTTGGAACGTGTAAGCCATTATCGTTGATGAAATGCAGGGACCAGACAGCTGTTTTTGAGATGTACATGCGTGTCTCTATCGCAATGACGCATACCAGCAAGGCAGCAAATCATGGTTTGTTTTTTAGTGCGCGCGCGTTTTCCTTTCTTTTGATTAATTGATACCTACTTGTATTGTATGAAGTGCATATGTATTACGTAACAGTATTGGCATTTAGTAAGCACATGATTAGAGAAAATGCATCACAATACGCAATTGAATTTAAAAATAATCATTATTATTCTGTTAAAAATAGTTTCCGTAGAATCGGGGTGAATTGGTGGACATAGTTATTAAAATTGAATGATTAATAT

>Glyma08g06780.3   sequence type=transcript   gene model=Glyma08g06780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTGGACAGACTATAAAGTGAGCGAATGGTCCAATCCATCCATTATTCTCTGTGTGTCTTTCTCTACTTCTTTCCCTTTCCCCAACCCCTCATACGTTACTCTTTAAATACGCACCACATCTTCACGTGCCTCTCGGTTCTTCAGTCCAAACAATGGCCATGGTTGAGCTCTGGTGGATTACGTGCTTTCTCTAACTACTGTTTTCCACACTTAACGAACCAGAACACAGTGAGAAAGACATAATGGCGGTGGAGTACACATGCTGCTCAACGGCCTTCTTCGTTCACATACTGGTCATCGTGCTGCTCGTGCTTTTCGCGGGCCTCATGTCGGGCCTCACCTTGGGCCTCATGTCGCTCAGCCTCGTTGATCTTGAAGTTCTTGCTAAGTCTGGTACTCCTCAGGATCGTAAACACGCTGAGAAGATATTACCAGTTGTCAAAAACCAACATTTATTGCTATGTACTCTGCTAATTTGCAATGCTGCAGCCATGGAGACACTTCCTATTTTTCTTGATGGCCTTGTTACTGCATGGGGCGCTATCCTAATTTCTGTGACATTAATTCTTTTGTTTGGTGAGATTATACCCCAATCAGTTTGTTCTCGGTATGGTTTGGCTATTGGTGCATCAGTGGCTCCCTTTGTCCGTGTGCTTGTATGCATATGTTTTCCAGTTGCCTATCCAATTAGTAAGGCTGGAAAAGGGGGGGAACTGACACATGATGAAACAACGATCATTGCCGGGGCACTTGAACTCAGTGAGAAGACGGCGAGTGATGCCATGACTCCTATATCTGAAACATTTACTGTTGATATTAATTCAAAGCTTGATAGGGAACTGATGAATGAGATATTGGAGAAAGGGCACAGCAGAGTCCCAGTCTATTATGAGCAGCCTACAAACATTATTGGACTTGTACTGGTCAAGAATTTATTGACAGTTCATCCAGAAGATGAAGCACCCATGAAGAGTGTAACCATACGCAGGATTCCAAGGGTTCCAGAAAGTATGCCACTTTATGACATTTTGAATGAGTTTCAGAAGGGCCATAGCCACATGGCAGTTGTTGTCAGACGGTGTGACAAGACTAACCAACAATCTTCCCAAAATAATGCAAATGACTCGGTGAGAGATGTTAAGGTGGATATTGATGGTGAAAAGCCTCCCAAAGAGAAAGCTTTGAAACCCAAGATGCCACTCCACAAGTGGAAAAGCTTTCCAAATACAAACAAGTCATCAAATAGGGGTTCTCGGAGCAGAAAATGGTCAAAAAATATGTACTCGGATATTTTGGAGATAGATGGAAGTCCCCTTCCAAAGCTCCCTGAAGAAGAAGAAGCCGTTGGAATTATTACCATGGAAGATGTCATTGAAGAGCTTTTACAGGAGGAGATCTTTGATGAGACAGATCATCATTTTGAAGACTCATAACAGTGGCTTTTTTCCATAAAACCTTCCATGTTCATATTTCTTGTTTGGACCTTAAAAATAATTAAATAGATAATGCGGTTTAGGGTTGAAAGCTGCTGTATAGAGATCTGAGTTGTGATTTGGAACGTGTAAGCCATTATCGTTGATGAAATGCAGGGACCAGACAGCTGTTTTTGAGATGTACATGCGTGTCTCTATCGCAATGACGCATACCAGCAAGGCAGCAAATCATGGTTTGTTTTTTAGTGCGCGCGCGTTTTCCTTTCTTTTGATTAATTGATACCTACTTGTATTGTATGAAGTGCATATGTATTACGTAACAGTATTGGCATTTAGTAAGCACATGATTAGAGAAAATGCATCACAATACGCAATTGAATTTAAAAATAATCATTATTATTCTGTTAAAAATAGTTTCCGTAGAATCGGGGTGAATTGGTGGACATAGTTATTAAAATTGAATGATTAATAT

Coding sequences of Glyma08g06780

Limit To All Plant Sequences

>Glyma08g06780.1   sequence type=CDS   gene model=Glyma08g06780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTGGAGTACACATGCTGCTCAACGGCCTTCTTCGTTCACATACTGGTCATCGTGCTGCTCGTGCTTTTCGCGGGCCTCATGTCGGGCCTCACCTTGGGCCTCATGTCGCTCAGCCTCGTTGATCTTGAAGTTCTTGCTAAGTCTGGTACTCCTCAGGATCGTAAACACGCTGAGAAGATATTACCAGTTGTCAAAAACCAACATTTATTGCTATGTACTCTGCTAATTTGCAATGCTGCAGCCATGGAGACACTTCCTATTTTTCTTGATGGCCTTGTTACTGCATGGGGCGCTATCCTAATTTCTGTGACATTAATTCTTTTGTTTGGTGAGATTATACCCCAATCAGTTTGTTCTCGGTATGGTTTGGCTATTGGTGCATCAGTGGCTCCCTTTGTCCGTGTGCTTGTATGCATATGTTTTCCAGTTGCCTATCCAATTAGTAAGTTATTAGATTTTTTGCTGGGCCATCGACATGAAGCCCTATTCCGTAGAGCTGAGTTGAAAACACTCGTAAATTTGCATGGTAATGAGGCTGGAAAAGGGGGGGAACTGACACATGATGAAACAACGATCATTGCCGGGGCACTTGAACTCAGTGAGAAGACGGCGAGTGATGCCATGACTCCTATATCTGAAACATTTACTGTTGATATTAATTCAAAGCTTGATAGGGAACTGATGAATGAGATATTGGAGAAAGGGCACAGCAGAGTCCCAGTCTATTATGAGCAGCCTACAAACATTATTGGACTTGTACTGGTCAAGAATTTATTGACAGTTCATCCAGAAGATGAAGCACCCATGAAGAGTGTAACCATACGCAGGATTCCAAGGGTTCCAGAAAGTATGCCACTTTATGACATTTTGAATGAGTTTCAGAAGGGCCATAGCCACATGGCAGTTGTTGTCAGACGGTGTGACAAGACTAACCAACAATCTTCCCAAAATAATGCAAATGACTCGGTGAGAGATGTTAAGGTGGATATTGATGGTGAAAAGCCTCCCAAAGAGAAAGCTTTGAAACCCAAGATGCCACTCCACAAGTGGAAAAGCTTTCCAAATACAAACAAGTCATCAAATAGGGGTTCTCGGAGCAGAAAATGGTCAAAAAATATGTACTCGGATATTTTGGAGATAGATGGAAGTCCCCTTCCAAAGCTCCCTGAAGAAGAAGAAGCCGTTGGAATTATTACCATGGAAGATGTCATTGAAGAGCTTTTACAGGAGGAGATCTTTGATGAGACAGATCATCATTTTGAAGACTCATAA

>Glyma08g06780.2   sequence type=CDS   gene model=Glyma08g06780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTGGAGTACACATGCTGCTCAACGGCCTTCTTCGTTCACATACTGGTCATCGTGCTGCTCGTGCTTTTCGCGGGCCTCATGTCGGGCCTCACCTTGGGCCTCATGTCGCTCAGCCTCGTTGATCTTGAAGTTCTTGCTAAGTCTGGTACTCCTCAGGATCGTAAACACGCTGAGAAGATATTACCAGTTGTCAAAAACCAACATTTATTGCTATGTACTCTGCTAATTTGCAATGCTGCAGCCATGGAGACACTTCCTATTTTTCTTGATGGCCTTGTTACTGCATGGGGCGCTATCCTAATTTCTGTGACATTAATTCTTTTGTTTGGTGAGATTATACCCCAATCAGTTTGTTCTCGGTATGGTTTGGCTATTGGTGCATCAGTGGCTCCCTTTGTCCGTGTGCTTGTATGCATATGTTTTCCAGTTGCCTATCCAATTAGTAAGTTATTAGATTTTTTGCTGGGCCATCGACATGAAGCCCTATTCCGTAGAGCTGAGTTGAAAACACTCGTAAATTTGCATGGTAATGAGGCTGGAAAAGGGGGGGAACTGACACATGATGAAACAACGATCATTGCCGGGGCACTTGAACTCAGTGAGAAGACGGCGAGTGATGCCATGACTCCTATATCTGAAACATTTACTGTTGATATTAATTCAAAGCTTGATAGGGAACTGATGAATGAGATATTGGAGAAAGGGCACAGCAGAGTCCCAGTCTATTATGAGCAGCCTACAAACATTATTGGACTTGTACTGGTCAAGAATTTATTGACAGTTCATCCAGAAGATGAAGCACCCATGAAGAGTGTAACCATACGCAGGATTCCAAGGGTTCCAGAAAGTATGCCACTTTATGACATTTTGAATGAGTTTCAGAAGGGCCATAGCCACATGGCAGTTGTTGTCAGACGGTGTGACAAGACTAACCAACAATCTTCCCAAAATAATGCAAATGGTAAAAACATGCTATAA

>Glyma08g06780.3   sequence type=CDS   gene model=Glyma08g06780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTGGAGTACACATGCTGCTCAACGGCCTTCTTCGTTCACATACTGGTCATCGTGCTGCTCGTGCTTTTCGCGGGCCTCATGTCGGGCCTCACCTTGGGCCTCATGTCGCTCAGCCTCGTTGATCTTGAAGTTCTTGCTAAGTCTGGTACTCCTCAGGATCGTAAACACGCTGAGAAGATATTACCAGTTGTCAAAAACCAACATTTATTGCTATGTACTCTGCTAATTTGCAATGCTGCAGCCATGGAGACACTTCCTATTTTTCTTGATGGCCTTGTTACTGCATGGGGCGCTATCCTAATTTCTGTGACATTAATTCTTTTGTTTGGTGAGATTATACCCCAATCAGTTTGTTCTCGGTATGGTTTGGCTATTGGTGCATCAGTGGCTCCCTTTGTCCGTGTGCTTGTATGCATATGTTTTCCAGTTGCCTATCCAATTAGTAAGGCTGGAAAAGGGGGGGAACTGACACATGATGAAACAACGATCATTGCCGGGGCACTTGAACTCAGTGAGAAGACGGCGAGTGATGCCATGACTCCTATATCTGAAACATTTACTGTTGATATTAATTCAAAGCTTGATAGGGAACTGATGAATGAGATATTGGAGAAAGGGCACAGCAGAGTCCCAGTCTATTATGAGCAGCCTACAAACATTATTGGACTTGTACTGGTCAAGAATTTATTGACAGTTCATCCAGAAGATGAAGCACCCATGAAGAGTGTAACCATACGCAGGATTCCAAGGGTTCCAGAAAGTATGCCACTTTATGACATTTTGAATGAGTTTCAGAAGGGCCATAGCCACATGGCAGTTGTTGTCAGACGGTGTGACAAGACTAACCAACAATCTTCCCAAAATAATGCAAATGACTCGGTGAGAGATGTTAAGGTGGATATTGATGGTGAAAAGCCTCCCAAAGAGAAAGCTTTGAAACCCAAGATGCCACTCCACAAGTGGAAAAGCTTTCCAAATACAAACAAGTCATCAAATAGGGGTTCTCGGAGCAGAAAATGGTCAAAAAATATGTACTCGGATATTTTGGAGATAGATGGAAGTCCCCTTCCAAAGCTCCCTGAAGAAGAAGAAGCCGTTGGAATTATTACCATGGAAGATGTCATTGAAGAGCTTTTACAGGAGGAGATCTTTGATGAGACAGATCATCATTTTGAAGACTCATAA

Predicted protein sequences of Glyma08g06780

Limit To All Plant Sequences

>Glyma08g06780.1   sequence type=predicted peptide   gene model=Glyma08g06780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVEYTCCSTAFFVHILVIVLLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAEKILPVVKNQHLLLCTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSVCSRYGLAIGASVAPFVRVLVCICFPVAYPISKLLDFLLGHRHEALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELSEKTASDAMTPISETFTVDINSKLDRELMNEILEKGHSRVPVYYEQPTNIIGLVLVKNLLTVHPEDEAPMKSVTIRRIPRVPESMPLYDILNEFQKGHSHMAVVVRRCDKTNQQSSQNNANDSVRDVKVDIDGEKPPKEKALKPKMPLHKWKSFPNTNKSSNRGSRSRKWSKNMYSDILEIDGSPLPKLPEEEEAVGIITMEDVIEELLQEEIFDETDHHFEDS*

>Glyma08g06780.2   sequence type=predicted peptide   gene model=Glyma08g06780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVEYTCCSTAFFVHILVIVLLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAEKILPVVKNQHLLLCTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSVCSRYGLAIGASVAPFVRVLVCICFPVAYPISKLLDFLLGHRHEALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELSEKTASDAMTPISETFTVDINSKLDRELMNEILEKGHSRVPVYYEQPTNIIGLVLVKNLLTVHPEDEAPMKSVTIRRIPRVPESMPLYDILNEFQKGHSHMAVVVRRCDKTNQQSSQNNANGKNML*

>Glyma08g06780.3   sequence type=predicted peptide   gene model=Glyma08g06780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVEYTCCSTAFFVHILVIVLLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAEKILPVVKNQHLLLCTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSVCSRYGLAIGASVAPFVRVLVCICFPVAYPISKAGKGGELTHDETTIIAGALELSEKTASDAMTPISETFTVDINSKLDRELMNEILEKGHSRVPVYYEQPTNIIGLVLVKNLLTVHPEDEAPMKSVTIRRIPRVPESMPLYDILNEFQKGHSHMAVVVRRCDKTNQQSSQNNANDSVRDVKVDIDGEKPPKEKALKPKMPLHKWKSFPNTNKSSNRGSRSRKWSKNMYSDILEIDGSPLPKLPEEEEAVGIITMEDVIEELLQEEIFDETDHHFEDS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain