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Report for Sequence Feature Glyma08g06773

Feature Type:gene_model
Chromosome:Gm08
Start:4846924
stop:4850715
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g06773
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G50090AT Annotation by Michelle Graham. TAIR10: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein | chr1:18554641-18556794 REVERSE LENGTH=367 SoyBaseE_val: 2.00E-164ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009081GO-bp Annotation by Michelle Graham. GO Biological Process: branched-chain amino acid metabolic process SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004084GO-mf Annotation by Michelle Graham. GO Molecular Function: branched-chain-amino-acid transaminase activity SoyBaseN/AISS
KOG0975 KOG Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily JGI ISS
PTHR11825Panther SUBGROUP IIII AMINOTRANSFERASE JGI ISS
PTHR11825:SF2Panther BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE JGI ISS
PF01063PFAM Aminotransferase class IV JGI ISS
UniRef100_I1KQT6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Branched-chain-amino-acid aminotransferase n=1 Tax=Glycine max RepID=I1KQT6_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI0002338E2DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338E2D related cluster n=1 Tax=unknown RepID=UPI0002338E2D SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g06773
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g06773 not represented in the dataset
Glyma08g06773 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06773
ParalogEvidenceComments
Glyma07g30510 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06773 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g063300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g06773
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g06773
>Glyma08g06773.1   sequence type=CDS   gene model=Glyma08g06773   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTCCCTTCTGTTTTGGGGAATTCTGAAGACAATTCAAAAAGTGTTGCTGTTGAAAACTGTGCTGGCATAAACTGGGATGAGCTTGGATTTAACCCAGTTCCCACAGATTTCATGTATGTCATGAAATGTGCAAAAGGAGAAAAGTTTTCTGAAGGATCCCTCATTCCCTATGGTAACATAGAGATCAGCCCTTTTGCTGTGATACTAAACTATGGACAGGGAATCTTTGAGGGACTAAAGGCATATAGAACTGAAGATGGGTGCATCCTTCTGTTTAGACCAGAAGAGAATGCTCAACGAATGAAGATAGGAGCAGACAGATTGTGCATGCCATCCCCATCCATTGACCAGTTTGTTGCTGCTGTGAAGCAGACAGTTCTTGCCAACAAACGTTGGGTGCCTCCACCAGGGAAAGGGTCACTATATATTAGGCCATTGCTCATGGGAACCGGAGCTTCTTTGAACTTGTCTCCAGCACCTGAGTACACATTACTTATTTATTGTTCTCCTGTCACTAATTACCACAAGGGTTCACTGAACTTAAAAGTGGAGAGTAAGTTCTACCGAGCAATATCTGGCACTGGTGGAACCGGAGGGATCAAGAGTGTTACCAACTATGCCCCTGTTTATGCTGCAAGCATTGAAGCAAAGGCCAGTGGATTCTCTGATGTTTTGTTCTTGGACTCAGCAACTGGAAAAAATATAGAGGAGGTTTCTGCATGCAATGTGTTTGTTGTGAAGGGTAATGCTATCTGCACCCCGGCAACAAATGGAGCCATCCTCCCTGGGATCACACGAAAATCCATCATTGAGATTGCCTTAGATATGGGTTATCAGGTCACGGAACGTGCCATATCAGTGGAGGAAATGCTAGATGCTGATGAAGTGTTCTGCACAGGAACTGCAGTTGTTGTCAACTCTGTTTCATCTGTAACCTACAAAGAAACAAGAACTGAGTATAAAACAGGACCAGAAACATTGTCCCAAAAACTGCGCAAAACACTGGTTGGAATTCAAACTGGGTGTATTGAGGACACAAAGGGCTGGACAGTTCGAATAGATTGA
Predicted protein sequences of Glyma08g06773
>Glyma08g06773.1   sequence type=predicted peptide   gene model=Glyma08g06773   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLPSVLGNSEDNSKSVAVENCAGINWDELGFNPVPTDFMYVMKCAKGEKFSEGSLIPYGNIEISPFAVILNYGQGIFEGLKAYRTEDGCILLFRPEENAQRMKIGADRLCMPSPSIDQFVAAVKQTVLANKRWVPPPGKGSLYIRPLLMGTGASLNLSPAPEYTLLIYCSPVTNYHKGSLNLKVESKFYRAISGTGGTGGIKSVTNYAPVYAASIEAKASGFSDVLFLDSATGKNIEEVSACNVFVVKGNAICTPATNGAILPGITRKSIIEIALDMGYQVTERAISVEEMLDADEVFCTGTAVVVNSVSSVTYKETRTEYKTGPETLSQKLRKTLVGIQTGCIEDTKGWTVRID*






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